| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0138 |
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| Symbol | |
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| ID | 5867826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 139911 |
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| End bp | 142658 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545211 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001666390 |
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| Protein GI | 167031159 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CGCCCCTCGT CCTGGTGGAC GGTTCCTCCT ACCTGTACCG CGCCTTTCAC
GCGCTGCCGC CGCTGACCAC GTCCAAGGGC ATGCCGACCG GTGCGGTGAA GGGTGTGCTG
AACATGCTCA AGAGCCTGCG CAAGCAATAC CCCGACAGCC TGTTCGCCGT GGTGTTCGAC
GCCAAGGGCG GCACTTTCCG CGATGCCATG TTCGCCGAAT ACAAGGCCAA CCGCCCCAGC
ATGCCGGACG ACCTGCGGGT GCAGGTCGAG CCGCTGCATG CCAGCGTGAA GGCGCTGGGC
TATCCGTTAC TGTGCGTCGA GGGTGTAGAG GCCGACGACG TCATCGGCAC CCTGGCGCGC
AGTGCTGCCG CGAAGGGTCG CCCGGTGATC ATTTCGACCG GTGACAAGGA CATGGCTCAG
CTGGTGGACG GGCACATTAC CTTGGTCAAC ACCATGACCG GAAGCGTGCT GGACGTGGCT
GGCGTGCACG AGAAATTTGG CGTCGGCCCG GAACATATCA TCGACTTCCT GGCCCTGATG
GGTGACAAGG TCGACAACAT TCCCGGCGTA CCGGGCGTGG GCGAAAAAAC CGCCGTGGGC
CTGCTGACCG GTATCGGCGG CGGCCTCAGC GATTTGTACG CGAACCTGGA CAAGGTACCG
GCACTGGCCA TTCGTGGCGC CAAGACCTTG CCGGCCAAGC TTGAAGAGCA CCGGGACGCA
GCGTTCCTGT CCTACGAGCT GGCCACCATC AAGGTCGATG TGCCGCTGGA TGTCGAAGTG
GATGCGCTGG TGTGCGGTGA GCCTGATCGC GAAGCGTTGC AGGCGCTGTA CACCGAGATG
GAGTTCAAGA GCTGGGTTGC CGAAGTGCAG CGTGAGGCCG CAAGGGCGGG TAATGAGGTT
GCGCCGGTCG AAGAGCCGGC GGCCAAGGTT GAGCCGACGT ACGAAACCAT TCTTGACCAG
GCCCGTTTCG AGGCCTGGCT GGACAAGCTG CGTCAGGCGC CGCTGTTCGC CTTCGATACC
GAAACAACCG GCCTGGATGC CCAGAAGGCG CAGCTGGTTG GCCTGTCTTT CGCTGTTGCG
CCCCATGAGG CGGCTTATGT GCCGCTGGCC CACGATTACG AAGGCGCGCC AGCCCAACTG
GACCGCGACG CCGTGCTGCT GGCGCTGAAA CCACTGCTGG AAGACCCGGC CAAGGCCAAG
GTCGGGCAGA ACGCGAAGTA TGACATCAAC ATCCTCGCCA ATGGCTCGCC CGCCATCGAG
ATGCGTGGCG TGGCCTACGA CACCATGCTC GAGTCGTATG TGCTGAACTC CACCGCCACC
CGTCATGACA TGGACAGCCT GGCGCAGAAG TACCTCGACC ACACCACCAT CGCCTTCGAG
GATATCGCCG GCAAGGGCGC CAAGCAGCTC ACTTTCAACC AGATCAACCT GGACAAGGCC
GGCCCCTACG CGGCCGAAGA CGCCGACATC ACCCTGCGCC TGCACCAGGC GCTGCAGGCA
CGCCTGGCAC AGACGCCAAG CGTGCAGCCG GTGCTGATGG ACATCGAGAT GCCGCTGGTG
CCAGTGCTGG CCAAGATCGA GCGCCAGGGC GCGCTGGTCG ATGCCGCGCT GTTGCACGTC
CAAAGCGGCG AACTGGGCGT GAAGATGGGC GAACTGGAGC AACGTGCCTA CGAGCTGGCC
GGCGAGGAAT TCAACCTCGG CTCGCCCAAG CAGTTGGGCG CGATCCTTTA CGACAAGCTT
GGCATGCCGG TGCTGAGCAA GACCGCCAAG GGCCAGCCCT CCACCGCCGA AGCGGTGCTC
GATGAGCTGG CCTTGCTCGG TTACCCACTG CCTGAGGTAC TGATGCAGTA CCGCAGCCTG
AGCAAGCTCA AAAGCACCTA CACAGACAAG CTGCCGGGCC AGATCAACCC CCGCACCGGG
CGTATCCACA CCTCCTACCA GCAGGCTGTG GCGGCCACTG GCCGGCTGTC GTCGAGCGAC
CCTAACCTGC AGAACATCCC GATCCGTACC GCCGAAGGCC GGCGCATCCG CCAGGCGTTC
ATCGCCAGCC CAGGATACAA ACTGCTGGCG GCGGACTACT CGCAGATCGA GTTGCGCATC
ATGGCCCACC TGGCCAAGGA CGAAGGCTTG CTGCACGCTT TCCGCAACGA CCTCGACGTG
CACCGCGCCA CGGCGGCGGA AGTGTTCGGT GTGGCCTTGC AAGACGTCAC CACCGACCAA
CGTCGCAAGG CCAAGGCCAT CAACTTCGGC CTGATCTACG GCATGAGCGC CTTTGGTTTG
GCCAAGCAGA TCGGCGTCGA CCGCAAGCAG TCGCAGGATT ACATCGACCG CTACTTCGCC
CGCTACCCAG GCGTGCTGGC CTACATGGAA CGCACCCGCG CTCAGGCGGC CGAGCAAGGT
TTTGTCGAAA CCCTGTTCGG CCGTCGTCTG TACCTGCCGG ACATCAACGC CAAGAACCCC
GCCCTGCGCA AAGGCGCCGA GCGTACGGCG ATCAACGCGC CGATGCAGGG CACCGCGGCC
GACATCATCA AGCGGGCCAT GGTCAATGTG GATAACTGGC TGAGCGAGAG CGGGCTGGAT
GCCCGAGTGA TCCTGCAGGT ACACGACGAA CTGGTACTCG AGGTACGCGA GGACCTGGTT
CAGCAGGTGA AAGATGAAAT TCGCCAGCAC ATGAGCCAGG CAGCGCAGCT GGATGTACCG
CTGCTGGTGG AGGCAGGAAT TGGTGCGAAT TGGGACGAAG CTCACTGA
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| Protein sequence | MSQAPLVLVD GSSYLYRAFH ALPPLTTSKG MPTGAVKGVL NMLKSLRKQY PDSLFAVVFD
AKGGTFRDAM FAEYKANRPS MPDDLRVQVE PLHASVKALG YPLLCVEGVE ADDVIGTLAR
SAAAKGRPVI ISTGDKDMAQ LVDGHITLVN TMTGSVLDVA GVHEKFGVGP EHIIDFLALM
GDKVDNIPGV PGVGEKTAVG LLTGIGGGLS DLYANLDKVP ALAIRGAKTL PAKLEEHRDA
AFLSYELATI KVDVPLDVEV DALVCGEPDR EALQALYTEM EFKSWVAEVQ REAARAGNEV
APVEEPAAKV EPTYETILDQ ARFEAWLDKL RQAPLFAFDT ETTGLDAQKA QLVGLSFAVA
PHEAAYVPLA HDYEGAPAQL DRDAVLLALK PLLEDPAKAK VGQNAKYDIN ILANGSPAIE
MRGVAYDTML ESYVLNSTAT RHDMDSLAQK YLDHTTIAFE DIAGKGAKQL TFNQINLDKA
GPYAAEDADI TLRLHQALQA RLAQTPSVQP VLMDIEMPLV PVLAKIERQG ALVDAALLHV
QSGELGVKMG ELEQRAYELA GEEFNLGSPK QLGAILYDKL GMPVLSKTAK GQPSTAEAVL
DELALLGYPL PEVLMQYRSL SKLKSTYTDK LPGQINPRTG RIHTSYQQAV AATGRLSSSD
PNLQNIPIRT AEGRRIRQAF IASPGYKLLA ADYSQIELRI MAHLAKDEGL LHAFRNDLDV
HRATAAEVFG VALQDVTTDQ RRKAKAINFG LIYGMSAFGL AKQIGVDRKQ SQDYIDRYFA
RYPGVLAYME RTRAQAAEQG FVETLFGRRL YLPDINAKNP ALRKGAERTA INAPMQGTAA
DIIKRAMVNV DNWLSESGLD ARVILQVHDE LVLEVREDLV QQVKDEIRQH MSQAAQLDVP
LLVEAGIGAN WDEAH
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