| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0085 |
|---|
| Symbol | |
|---|
| ID | 5867773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 91963 |
|---|
| End bp | 93060 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641545158 |
|---|
| Product | DNA protecting protein DprA |
|---|
| Protein accession | YP_001666337 |
|---|
| Protein GI | 167031106 |
|---|
| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
|---|
| TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.182517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000000000667659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTT ACCATTCGTC GCTCTGCCCG CCTGCCGAAC TTGAGGCGCG ATTACGTCTG
CATCGCCTGC CCGAGACAGG ACTGCGACGT TTTCGCACCT TGCTCGATGC CTTCGGCAGT
GCCTCTTGCG CGCTCAGTGC GCCCGGTGCG GCCTGGCGAG CGTTGGGCAT CCCGCAAGCC
ACCATCGATG CCCGGCGCAG TGCCGAGGTA CGAGATGGGG CGCTGGCCGC AATGGCCTGG
TTAGAGCGCC CGGGCCAGCA TTTGCTGATG TGGGACGACC CTGGCTACCC TGCCTTGCTG
GCAGAAACCG ACGATGCCCC ACCGCTGCTT TTCGTTGCGG GTGAACCGGC CTTGCTCGAC
CGCCCTCAGC TGGCCATCGT GGGCAGCAGA CGTGCTACAC CCCCGGCGCT CGACACTGCC
CGGGCATTTT CCCGCTATCT CGCACAAGCC GGTTTCACCA TTACCAGCGG GCTGGCGGTA
GGTGTCGACG GTGCCGCTCA TCGGGCCGCG TTGCAGGCCG GTGGGTGCAC GATTGCCGTG
CTCGGTACGG GGCTGCAAAA ACTTTATCCA CAGCGCCATC ATGAGCTTGC GCAGGCGATG
ATCGACAATG GCAGTGCGCT GGTTTCCGAG TATCCGCTGG ATGCCGGGCC ACTGCCCGGC
AATTTCCCAC GGCGCAATCG CATCATCAGC GGCTTGTCGC TGGGCGTGCT GGTGGTAGAG
GCCAGCCTGG CCAGCGGCTC GCTCATCACG GCGCGCCTGG CGGCCGAGCA AGGCCGCGAG
GTGTATGCCA TTCCGGGTTC CATTCACCAC CCGGGGGCCA AGGGCTGTCA CCAGCTGATC
CGTGATGGGG CGCTGCTGGT GGAAAGTGTG GAGCAGATCC TGGAAAGCCT GAAGGGTTGG
CAGAACCTGC CGCCTGCAGT TGTGGACAGG TTCGAGCATC CCCTGCTTGC CCTGCTGCAT
GCAGCACCGC AAACCAGCGA AAGCCTGGCG CACTGCAGCG AGCTGCCGTT GGCCGAGGTA
CTGGCGCAGC TGACCGAGCT GGAGCTGGAC GGCCGGGTCA GCAATGAAGC CGGGCGTTGG
TTTGCCCGCG CGGGCTAA
|
|---|
| Protein sequence | MPRYHSSLCP PAELEARLRL HRLPETGLRR FRTLLDAFGS ASCALSAPGA AWRALGIPQA
TIDARRSAEV RDGALAAMAW LERPGQHLLM WDDPGYPALL AETDDAPPLL FVAGEPALLD
RPQLAIVGSR RATPPALDTA RAFSRYLAQA GFTITSGLAV GVDGAAHRAA LQAGGCTIAV
LGTGLQKLYP QRHHELAQAM IDNGSALVSE YPLDAGPLPG NFPRRNRIIS GLSLGVLVVE
ASLASGSLIT ARLAAEQGRE VYAIPGSIHH PGAKGCHQLI RDGALLVESV EQILESLKGW
QNLPPAVVDR FEHPLLALLH AAPQTSESLA HCSELPLAEV LAQLTELELD GRVSNEAGRW
FARAG
|
|---|
| |