| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0061 |
|---|
| Symbol | |
|---|
| ID | 5867749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 66984 |
|---|
| End bp | 67658 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641545134 |
|---|
| Product | two component heavy metal response transcriptional regulator |
|---|
| Protein accession | YP_001666313 |
|---|
| Protein GI | 167031082 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0868462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTC TGGTAATTGA GGATGAAGTA AAAACTGCGG AGTATGTGCG TCAAGGTCTG
ACGGAATGTG GCTATGTCGT AGATTGCGTC CACACCGGGT CAGATGGATT ATTCTTGGCT
AAGCAGCACG AATATGAGCT GATTATCCTG GATATAAATC TGCCAGAGAT GGACGGTTGG
CAGGTCCTTG AGTTGTTGCG TCGTAAAAAC TGCCCTTCCC GTATCATGAT GCTGACGGCG
AGAAGCCGGC TGGCGGATAA GGTCCGGGGG CTGGAGAACG GAGCAGATGA CTACCTGATC
AAGCCATTTG AGTTCCCTGA GCTGCTGGCC CGGGTTCGCG CCTTGATGCG CAGGTCAGAT
CACCCTGCAT CCGTAGAGGT CATTCGCGTC GCTGACCTGG AGCTTGATCA GAGCCGGCAC
AGGGCATTCA GGGACGGTCA GCGCATTGAC CTGACCACGA AAGAATTCGC GTTACTGCAT
TACCTGATGC GTAATACCGG TGTGGTGCTG AGCCGCACCC AAATTATTTC GCAGGTTTGG
GATATGAATT TTGACTGCGA CACAAACGTT GTAGAGGTGT CGATTCGAAG ACTCAGAGCC
AAGATAGATG ACCCTTTCGA GACCAAACTG ATACATACGC TTCGGGGCGT AGGGTATGTG
CTTGAAAAAC GATAG
|
|---|
| Protein sequence | MRILVIEDEV KTAEYVRQGL TECGYVVDCV HTGSDGLFLA KQHEYELIIL DINLPEMDGW
QVLELLRRKN CPSRIMMLTA RSRLADKVRG LENGADDYLI KPFEFPELLA RVRALMRRSD
HPASVEVIRV ADLELDQSRH RAFRDGQRID LTTKEFALLH YLMRNTGVVL SRTQIISQVW
DMNFDCDTNV VEVSIRRLRA KIDDPFETKL IHTLRGVGYV LEKR
|
|---|
| |