| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0059 |
|---|
| Symbol | |
|---|
| ID | 5867747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 63476 |
|---|
| End bp | 64747 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641545132 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001666311 |
|---|
| Protein GI | 167031080 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.56854 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCCGGT ATAACCGCAA TGTCTTACCC AAGACCCCCG TCTCGCCCTG GAAGATCGCT
GCACTCTGTG CAGTCATCTC TGGGTTGATG GCGCCTGCAG CCCTTGCCCA AAGCATCAGC
TTGCCCCAGG CGCTTTCGAC GGCCATGGAT GCCAACCCAG ACCTGGCCGC GGCCAGGCAA
GAAATTGGGA TCGCTGATGG TGCTCGCAAG CAGGCCGGGC TTATCCCCAA CCCCACAATC
TCGTATGACG TGGAAGACAC CCGTCGTAAC ACCAGCCAGA CGACTGTCTC TCTCAGCCAG
ACCCTTGAGC TGGGCGGTAA GCGGGGGGCT CGTGTTGACG TCGCCACATA CGGGCAGACC
GCCGCACAGC TTGAGTTAGA CCGTCGCGTT AACGGCCTGC GTGCAGATGT CGTCCAAGCC
TTTTACGCCG CGTTGCGGGC CCAGACAGGT CTCGACCTGG CCAAGCAATC TCTCGAACTG
ACTGAGCGCG GTCTTCGCAT CGTCGATGGC CGTGTTCGCG CAGGTAAGTC GTCCCCAGTG
GAGGCGACCC GCGCTCAAGT GCAACTGGCC GAAGCCCAGC TGCAAGTTCG ACGTGCAGAA
ACGGAAAAAG CGACCGCTTA CCAACAGCTC GCTCAAATTA CCGGGAGCTC AGTCACCGTG
TTTGATCGAC TCGAATCGCC AACCCTCTCC CCGGGCTTGC CACCTCGCAC TGAAGATCTG
CTGGCTAAGC TCGACCAAAC AGCAGAAATG CGTCAGGCCG TGGTGCAGAT AGACAAGAGC
GATGCCTCGC TCGGCTCAGA GAAAGCTCAG CGTATCCCGA ACCTTACTGT CAGTGTAGGT
AGCCAGTACG ACCGCTCTGT GCGCGAGCGG GTCAACACTG TGGGCCTGTC TATGCCTTTG
CCGCTGTTCG ATCGTAACCA GGGCAACATT CTTTCCGCTT CTCGTCGTGC AGATCAGGCC
CGGGACCAGC GCAATGCTGT TGAGCTGCGC CTGCGCACCG AAACCCAAAC CGCGTTGAAC
CAATGGTCCA CCGCCATGCA GGAGGTCGAG TCCTACGACA AGACCATTCT GCCTTCAGCC
CAACAAGCCG TAGAGACCGC AACCCGCGGC TTCGAGATGG GCAAATTCGG TTTCATCGAA
GTGCTGGATG CCCAGCGCAC CTTGATCGTC GCTCGTGGCC AATACCTCGA ATCGTTGGCA
GCGGCGACCA ATGCGCGTGC GCAGGTGGAA AGGGTTTATG GCGAAGTCGG CTCAACCGCC
GGCACTCGCT GA
|
|---|
| Protein sequence | MPRYNRNVLP KTPVSPWKIA ALCAVISGLM APAALAQSIS LPQALSTAMD ANPDLAAARQ
EIGIADGARK QAGLIPNPTI SYDVEDTRRN TSQTTVSLSQ TLELGGKRGA RVDVATYGQT
AAQLELDRRV NGLRADVVQA FYAALRAQTG LDLAKQSLEL TERGLRIVDG RVRAGKSSPV
EATRAQVQLA EAQLQVRRAE TEKATAYQQL AQITGSSVTV FDRLESPTLS PGLPPRTEDL
LAKLDQTAEM RQAVVQIDKS DASLGSEKAQ RIPNLTVSVG SQYDRSVRER VNTVGLSMPL
PLFDRNQGNI LSASRRADQA RDQRNAVELR LRTETQTALN QWSTAMQEVE SYDKTILPSA
QQAVETATRG FEMGKFGFIE VLDAQRTLIV ARGQYLESLA AATNARAQVE RVYGEVGSTA
GTR
|
|---|
| |