Gene PputGB1_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0008 
Symbol 
ID5868007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp8828 
End bp10786 
Gene Length1959 bp 
Protein Length652 aa 
Translation table11 
GC content53% 
IMG OID641545081 
Productintegrase catalytic region 
Protein accessionYP_001666260 
Protein GI167031029 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.171023 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACCT TTTCCCTTAG GGTGAAATTG GTCGTCATCG TTCGTGGCGT ACTGATGGTG 
CTTGAGAAGA GGCTTATTGA CCGGAAGCTG CTCTTTTTCG ATGAGCTTGG TGAGCCCACG
AAGCTATCCG AGAAGGAGTT CTATGAGGCC TACGAGAAGC GCGAGATCGA GATCTCCGCT
GATCAGCCAT ACCTTGGGAG GGTTCCGTAT GTGCGGAACG TCCCTCCAGA TATTTCATGC
TTCCCCAAAA AACATGGAGA TGAGGCATTG CGTCGACGCA AGTATCTGGA CGACCTAACT
AAGCGCGGTA AATACAAGCT ACCGGGTGAC GAAGACATGA TCAAGAAGCT TAGAGATATC
GCCAAAAAGA TTGGGGATGC GTGCGCACCC TCGGTTTCCA CTATTCGACG TTGGGCAGCC
AAATACATTG GCCAGAACGT AGTAAAGCTT ATCCCTCAGC ATGCCAAAAA GGGTCGGGCT
GCCGCGATAC AGGGAGAGCT CGAAGTTATT CTTGAAGGGG TGATTAATAA AACCTACCTG
CAGGATACGA TTCCAGCGGT CAGCGTGGTC GTTTCAGAAT TCGAGGATCA GATAAAAGAG
AGGAACAAAA GTCGTTTGCC TTCGGATCAG CTCAAGATCC CAAGCGGAAT GACTGTCCGA
AGGTACATCG CCAAGCTGGA TCCGTACCTT GTGGATAAGG AGAGGCTCGG AAAACACGCA
GCAGACAAGA AGCACCGTGT TGCGGCGGGT GTCCTACGTG TCCATGAGAT TTTGGAACGT
TGGGAAATTG ATCACACCTT GTTGGACGTC CAGCTTGTGG ATGAAACCTC GGGGCTGTGC
ATTGGGCGCC CCTATCTGAC GATCGTCCTC GACCGCTTCT CTCGAATGGT GATGGGATAT
TTGCTCCACC TGTCGGCGCC AAATACGGAA ACCGTGCTTC GTGTGATCGA ACGCTCAATC
CGTCCAAAAG CCGAATTGCT GAAGCGCTTT CCGAAAGTGA GAAATGAATG GTGGGCACGT
GGGCTGCCGG CTCGAATAGT CCCAGACAAC GCAGCGGAAT TTCACGCGGG CGATCTCATC
ATGGGATTCA ACGAGTTGGG TATCGAGATC ATGTATCCCG CTTCAAGGGC CCCTCAAAGG
AAAGGTGCCG TCGAACGCTT TTTCAGCACA CAGAACCTGG GGCTTATCCA CAACCTCCCG
GGTACCACCT TCTCGAATAT CCAGCAGCGT GGCGATTACG ACTCGGAGAA GAATGCATGT
TTCACGCTCC CTCAATTGGA GGCGGTGGTA GTGAAATGGA TCGTCGATGG TTACCACCAG
ACTCCTCATC GGGGGCTGGA CAACAGAACA CCGGCTCAAG TCTGGGGGAC TAGCGAGGCG
AACCATGTCA TCAGCCTTCC CGTCGACCTG GACTCGTTGG AGTGCATTCT GGCCAAGCGG
GCCTCGGTGA AGGTTCACCA TTACGGCATC GAGGTTGCCA AAGTGGGCTA CCACTCTACG
GAACTTGCTG AGCTCCGTAT GCGTTTGGCA GACGGAGAAA AGGTAAACGT CCGCTATCGA
GACGAAGCCG GGCACGTTTG GGTTCACGAC CGCTTCAGAA ACTTGTTCTT CAAAGTGCCC
GCCAAAGATG AGCGAATGGC CGGTAAGAGC AGGGAGGTGT GGAAGGCTGC CGAGAAAGCG
CTGCGAGAAA AATATAATGA GCAGCCTAGC TTCGAGGCTA CGCACAGGTG CTACCAGGAA
ATTATGGAAG ATGCAGACGA GGCCCGCCGT TCGCAGACGC TCAGAAAACG ACGCGCAGCT
GCCATAGCGA AAATCGACAA GGAGGGTCGA GTGACCGAAA GCACGCCTCC ACCCAAGGTA
CTCGCTGAAG TGGAATGGAC CGGTGACTCT ATTCCTAACA TTCCGCCAGC AGCCTTCAAG
GTCTCGGTTC GTCGCCCTGC TGGGAGTTCT AAGCCATGA
 
Protein sequence
MQTFSLRVKL VVIVRGVLMV LEKRLIDRKL LFFDELGEPT KLSEKEFYEA YEKREIEISA 
DQPYLGRVPY VRNVPPDISC FPKKHGDEAL RRRKYLDDLT KRGKYKLPGD EDMIKKLRDI
AKKIGDACAP SVSTIRRWAA KYIGQNVVKL IPQHAKKGRA AAIQGELEVI LEGVINKTYL
QDTIPAVSVV VSEFEDQIKE RNKSRLPSDQ LKIPSGMTVR RYIAKLDPYL VDKERLGKHA
ADKKHRVAAG VLRVHEILER WEIDHTLLDV QLVDETSGLC IGRPYLTIVL DRFSRMVMGY
LLHLSAPNTE TVLRVIERSI RPKAELLKRF PKVRNEWWAR GLPARIVPDN AAEFHAGDLI
MGFNELGIEI MYPASRAPQR KGAVERFFST QNLGLIHNLP GTTFSNIQQR GDYDSEKNAC
FTLPQLEAVV VKWIVDGYHQ TPHRGLDNRT PAQVWGTSEA NHVISLPVDL DSLECILAKR
ASVKVHHYGI EVAKVGYHST ELAELRMRLA DGEKVNVRYR DEAGHVWVHD RFRNLFFKVP
AKDERMAGKS REVWKAAEKA LREKYNEQPS FEATHRCYQE IMEDADEARR SQTLRKRRAA
AIAKIDKEGR VTESTPPPKV LAEVEWTGDS IPNIPPAAFK VSVRRPAGSS KP