| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Teth514_0089 |
|---|
| Symbol | rho |
|---|
| ID | 5876966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoanaerobacter sp. X514 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010320 |
|---|
| Strand | + |
|---|
| Start bp | 88046 |
|---|
| End bp | 89572 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641540435 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_001661747 |
|---|
| Protein GI | 167038762 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000346786 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCATTTTG ATATTAATAC TTTGGGAAAT TTGAGTTTGA TGGAACTGAG AGAAATTGCA
AAAGAGTTAG GCATTAAAAG TATTACGAAA TACAGAAAAC AAGAGCTGAG AGAAAAAATT
TTGGAAAAAG TTAGTCAATT AAATGGAGAA AATTTAATTC AAGAGGATAA CAGAAAAGAG
GAAGGTTTAA ATGAGGGGCC AACACAAGAA TTACAAGAAA GTAGGGTAGG GAAAAATACA
GACGATACTT CAAATACAAA TTCTAACATA TCGAAAAATG GATATGCAAA GTCTATTAGT
ACTGAAAATA GCGCAAATGG ATTACAAGCT CAATCAAAGC CTTCAAAAGA CATCTTGCCA
ATTGCTAAAG AACTTTCTGA TCCATTGAAA GAACTTATAC AGACACAAGG AGATGTAGTG
GCAGAAGGCA TTCTTGATAT TTTGCCAGAT GGTTACGGAT TTTTAAGAGT AGAAAACTTT
GTTCAAGGGC CTAAAGATAT ATATATTTCT CAATCGCAAA TAAGGCGTTT TGGCTTAAAA
GTTGGCGACA AAGTAAGAGG TATTACAAGG ATTCCTAGAG AAGGGGAAAA ATATTCTGCA
ATTCTTTATG TGGAATCTAT AAATGGTGAA GATCCCGAAA ATGCTAAAAA AAGGATTCCC
TTTGATGAAT TAACTCCTAT TTTCCCAAAT GAGAAATTGA GATTAGAGAC TTCACCTACA
GAATTTTCCA TGAGATTGGT AGATATCATT GCTCCTATAG GTAAAGGGCA AAGGGGTATG
ATTGTTGCAC CGCCAAAAGC AGGAAAAACC ACTTTACTTA AGCAAATTGC CAATAGCATT
TCACAAAACC ATCCAGAAGT TATTCTCATT GTGCTTTTAA TTGATGAACG CCCTGAAGAA
GTAACTGACA TGAAACGTTC TATAAAAGGA GAAGTAGTAT ATTCTACTTT TGATGAACTC
CCAGAACACC ATACTAAAGT GGCTGAAATG GTATTAGAGC ACGCTAAAAG ACTTGTGGAG
TATAAAAAGG ATGTGGTGAT TCTTTTAGAT AGTATTACTA GGTTAGCGAG AGCTTATAAC
CTTATTACAC CTCCTTCAGG AAGAACTCTT TCTGGTGGCA TTGACCCTTC TGCATTACAT
CCTCCGAAAA GATTTTTTGG AGCAGCCAGG AATATAGAAG AGGGTGGAAG TTTAACTATC
CTTGCTACTG CTTTGATTGA AACGGGAAGC CGCATGGATG AAGTTATATT TGAAGAATTT
AAGGGAACGG GCAATATGGA ACTTCACCTT GACAGAAAAT TACAAGAAAG AAGGATATTC
CCTGCTATTG ATATATACAA ATCGGGTACA AGAAAAGAAG AATTGCTGCT TACTAAAGAA
GAATTGGAGG CCATGTGGAT ATTAAGGAAA GCCATGTCAA ATTTACCGCC TGCAGAGGTT
ACAGAGATGT TAATTGAAAA ATTAATACGA ACTAAATCTA ATGCGGAGTT TATAAATATG
ATAAGAGCAC AATTATATAA ATCTTGA
|
|---|
| Protein sequence | MHFDINTLGN LSLMELREIA KELGIKSITK YRKQELREKI LEKVSQLNGE NLIQEDNRKE
EGLNEGPTQE LQESRVGKNT DDTSNTNSNI SKNGYAKSIS TENSANGLQA QSKPSKDILP
IAKELSDPLK ELIQTQGDVV AEGILDILPD GYGFLRVENF VQGPKDIYIS QSQIRRFGLK
VGDKVRGITR IPREGEKYSA ILYVESINGE DPENAKKRIP FDELTPIFPN EKLRLETSPT
EFSMRLVDII APIGKGQRGM IVAPPKAGKT TLLKQIANSI SQNHPEVILI VLLIDERPEE
VTDMKRSIKG EVVYSTFDEL PEHHTKVAEM VLEHAKRLVE YKKDVVILLD SITRLARAYN
LITPPSGRTL SGGIDPSALH PPKRFFGAAR NIEEGGSLTI LATALIETGS RMDEVIFEEF
KGTGNMELHL DRKLQERRIF PAIDIYKSGT RKEELLLTKE ELEAMWILRK AMSNLPPAEV
TEMLIEKLIR TKSNAEFINM IRAQLYKS
|
|---|
| |