Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BcerKBAB4_0048 |
Symbol | |
ID | 5840382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus weihenstephanensis KBAB4 |
Kingdom | Bacteria |
Replicon accession | NC_010184 |
Strand | + |
Start bp | 54386 |
End bp | 57916 |
Gene Length | 3531 bp |
Protein Length | 1176 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 641375161 |
Product | transcription-repair coupling factor |
Protein accession | YP_001642945 |
Protein GI | 163938061 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAGGTT TATTAGAGCA ATTTTATAAA AATGAAGAAA TACAATCGGT TATTAATGGG CTAGAAGATG GGTTGAAAGA ACAACTTGTA TCGGGTATGG CAACATCCTC TCGTTCATTA TTAATGGCAG CTTTATATAA AAAGACAAAG CAATCACAAC TTATCGTGAC GCACAATTTA TACCAAGCAC AAAAAGTACA TGAAGATTTA GTGGCGTTAC TTGGTGAAAA AGATGTTTGG CTATATCCGG TAAATGAATT GATAGCATCG GAGGTTGGTG TTGCAAGTCC AGAATTGAAG GCACAGCGTA TTGAAGTGTT AAATCGCTTA GCTGCAGGAG AGAATGGGAT TATTGTAGCG CCAGTTGCAG GGCTGCGTAG GTTTTTACCA ATAAAAGAAT TATGGAAGCA AAGGCAAATT GAAATCAATC TAGGGCAAGA GATTGATTTA GATGCACTCT TGCATACCTT ACATCATATT GGTTATGAGC GTAAGTCAAT GGTAGAAGCT CCAGGAGATT TTAGTTTGCG CGGGGGAATA TTAGATATTT ACCCATTAAC TGAAGAATTA CCATTTCGTA TTGAATTCTT TGATACACAG GTTGATTCTA TTCGATTATT TGATGTGGAA GAACAGCGCT CTCAAGATAA AAGGGAAAGT GTTCGGTTTG GTCCGGCAAC AGAGTTTTTA TTTTCACAGG AAGAATTGAA ATCGGGAATT AAGCATCTTG AAGAAGGTTT GACTAAGACG ATGCAAAAGC TTTCCGATGA TAAATTAAAG ACTACTGTGC TTGAGACGGT TAGTCATGAA ATTGAAATGT TGAAAAACGG GCAGAGTATA GAACAAATGT TTAAATATTT ATCTATTTTC TATAAAGAAC CTGCTAGTCT GATAGATTAT TTACCAGAAA ATGGTGTTGT GATTTTAGAT GAGATTTCCC GTATTCAAGA AACAGCATCA CATCTTGAAA CAGAAGAAGC GGAATGGTAT ATCTCACTTC TTGGCGAAGG AACAATTATT CAGGATTTAT CTTTCTCCCA CTCGTTTGAG GAGTTTCTTC ATAATAAAAA AAGAAGTTTT GTATATTTAA CGTTATTCTT ACGCCATATA GCACACACAC ATCCTCAAAA TATTGTGAAT GTGACATGTA AAACGATGCA AGATTTCCAC GGACAGATGC ATTTGTTAAA AACTGAAATT GATAGATGGA ATGAAGGTAA TTTTACGACC GTTGTGCTTG GAACAGATGA TGAACGTGTA AAAAAACTAC AACATATTTT AAGTGATTAT GATATTGATG CAGACATTGT AGAGGCGACA GATATCTTAT TGCCTGGAAG GTTACAAATT GCTGTAGGTG ATTTACATGC AGGCTTTGAA ATGCCAATGC AAAAGTTTGT TGTCATTACT GAAAAGGAGC TTTTTCATAA GAAGGTTAAA AAATCACAAC GTAAGCAAAA GTTATCTAAC GCTGAACGTA TTAAAAGTTA TTCGGAATTA AAAGTTGGAG ACCATGTAGT TCATGTAAAT CATGGTATAG GTAAATTTTT AGGTATTGAG ACATTAGAGA TTAATGGTGT TCATAAAGAT TATTTAAATA TTAAATATCA AGGTAATGAT AAGTTATACG TTCCAATTGA ACAAATTGAT CAAGTGCAAA AATACGTAGG GTCTGAAGGT AAGGAACCAA AAGTTTATAA ATTAGGCGGA AATGATTGGA AGAAGGTCAA AACGAAAGTT GAAAAATCTG TACAAGACAT TGCAGATGAC CTAATTAAAT TATATGCCGA GCGTGAAGCT TCGAAAGGTT ATGCATATAC ACCAGATACG GCAGAGCAAC AAGAGTTTGA ATCTTTATTC CCATATCAAG AGACAGAGGA TCAATTACGT TCTATTGAAG AGATTAAGAA AGATATGGAA CGCGGACGTC CGATGGATAG GCTTCTTTGT GGTGACGTAG GATATGGAAA GACTGAAGTA GCTATTCGTG CGGCATTTAA AGCAATTATG GATGAAAAAC AAGTTGCGAT TTTAGTACCA ACAACAATCC TTGCACAACA ACACTATGAA ACAATTCGAG AGCGTTTTCA AGATTATCCG ATTAATATAG GGTTACTAAG TAGATTCCGT ACACGAAAAC AACAAAATGA AACGATTAAA GGTTTAAAAG ATGGAACGGT GGATATTGTA ATCGGAACGC ATCGTATTTT ATCTAAAGAT GTTACTTATA AAGATTTAGG ACTTCTTATT ATTGATGAAG AACAAAGATT CGGCGTTACA CATAAAGAAA AAATTAAACA ATTGAAAGCA AATGTTGACG TGTTAACATT AACGGCAACT CCGATTCCAC GTACACTTCA TATGTCTATG CTTGGTGTGC GCGATTTATC TGTTATTGAG ACACCACCAG AGAATCGTTT CCCAGTACAA ACATATGTAG TAGAGTATAA TCCAGCGTTA ATGCGAGAAG CGATAGAGCG AGAGTTAGCA AGAGGCGGTC AAATTTACTT CCTATATAAC CGTGTGGAGG ATATTGAAAG AAAAGCAGAT GAAATTTCGA TGTTAGTTCC AGATGCTCGT GTAACATACG CACATGGGAA AATGAATGAA GGTGAATTAG AGTCTGTTAT GCTATCGTTT TTAGAAGGGC AGCATGATGT TCTTGTAAGT ACAACAATTA TTGAGACGGG TGTAGATATT CCGAATGTAA ATACATTAAT TGTATTTGAT GCAGATCGTA TGGGATTATC GCAGTTGTAT CAGCTTCGTG GTCGTGTTGG GCGTTCTAAT CGCGTCGCGT ATGCATACTT TGCATACAAA CGTGATAAAG TGTTATCGGA AGTTGCAGAG AGGCGTCTGC AAGCAATTAA AGAGTTTACA GAGCTTGGAT CTGGTTTCAA AATTGCGATG AGAGACTTAT CAATTCGTGG TGCGGGTAAT TTGTTAGGGG CAGAACAACA TGGATTTATT GATTCTGTCG GATTTGATCT ATATTCTCAA ATGTTAAAAG ATGCAATTGA GCAACGTAGA GGAACAGACG GAGTTGAAAA TACCGTTAAT GTTGAAATTG ATTTAGAAGT AGATGCATAT TTACCGGATG CGTACATTTC AGATAGTAAA CAAAAAATTA TGATGTATAA ACAATTTAGA GGTATTTCTG CAATTGAAGA TATTGAAGAG TTGCAGGAAG AGATGATCGA CAGATTTGGT GATTATCCAC AAGAAGTTGG TTATTTATTA CAAATTGCAA ACATTAAAGT GTTGGCAATG AAAGAACAAA TTGAGTTAAT TAAGCAAAAT AAATTTGAAG TAACATTCCT GTTTTCTGAA CAAGCGAGCC AAAATATAGA TGGTGGAAAA TTATTCATGC TAGGAAGTAG TTTTGGCCGT ATGATCGGTC TTGGTATGGA GGGGTCACAA TTGAAAATTG TGATGAAAAC GAATGGATTA GAGACGTCGA AATGGTTAAC AATTGCTGAA AATTTATTAA AAGGCTTGCC AGATGTAAAA AAAGAAGTAA TAAATGCCTA A
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Protein sequence | MIGLLEQFYK NEEIQSVING LEDGLKEQLV SGMATSSRSL LMAALYKKTK QSQLIVTHNL YQAQKVHEDL VALLGEKDVW LYPVNELIAS EVGVASPELK AQRIEVLNRL AAGENGIIVA PVAGLRRFLP IKELWKQRQI EINLGQEIDL DALLHTLHHI GYERKSMVEA PGDFSLRGGI LDIYPLTEEL PFRIEFFDTQ VDSIRLFDVE EQRSQDKRES VRFGPATEFL FSQEELKSGI KHLEEGLTKT MQKLSDDKLK TTVLETVSHE IEMLKNGQSI EQMFKYLSIF YKEPASLIDY LPENGVVILD EISRIQETAS HLETEEAEWY ISLLGEGTII QDLSFSHSFE EFLHNKKRSF VYLTLFLRHI AHTHPQNIVN VTCKTMQDFH GQMHLLKTEI DRWNEGNFTT VVLGTDDERV KKLQHILSDY DIDADIVEAT DILLPGRLQI AVGDLHAGFE MPMQKFVVIT EKELFHKKVK KSQRKQKLSN AERIKSYSEL KVGDHVVHVN HGIGKFLGIE TLEINGVHKD YLNIKYQGND KLYVPIEQID QVQKYVGSEG KEPKVYKLGG NDWKKVKTKV EKSVQDIADD LIKLYAEREA SKGYAYTPDT AEQQEFESLF PYQETEDQLR SIEEIKKDME RGRPMDRLLC GDVGYGKTEV AIRAAFKAIM DEKQVAILVP TTILAQQHYE TIRERFQDYP INIGLLSRFR TRKQQNETIK GLKDGTVDIV IGTHRILSKD VTYKDLGLLI IDEEQRFGVT HKEKIKQLKA NVDVLTLTAT PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNPAL MREAIERELA RGGQIYFLYN RVEDIERKAD EISMLVPDAR VTYAHGKMNE GELESVMLSF LEGQHDVLVS TTIIETGVDI PNVNTLIVFD ADRMGLSQLY QLRGRVGRSN RVAYAYFAYK RDKVLSEVAE RRLQAIKEFT ELGSGFKIAM RDLSIRGAGN LLGAEQHGFI DSVGFDLYSQ MLKDAIEQRR GTDGVENTVN VEIDLEVDAY LPDAYISDSK QKIMMYKQFR GISAIEDIEE LQEEMIDRFG DYPQEVGYLL QIANIKVLAM KEQIELIKQN KFEVTFLFSE QASQNIDGGK LFMLGSSFGR MIGLGMEGSQ LKIVMKTNGL ETSKWLTIAE NLLKGLPDVK KEVINA
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