| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3861 |
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| Symbol | |
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| ID | 5832771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 4288332 |
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| End bp | 4290341 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 641369651 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001641304 |
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| Protein GI | 163853261 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.227341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA TTCCAGACCC CTCCCCGGCC GTGCCCGCGG ACCAACCCGC CGCGCCCGAG
GGCGAGCGCA TCGCCAAGGC CATCGCCCGC GCCGGCATCG CTTCCCGCCG CGACGCGGAG
GCCCTGATCG AGGCCGGCCG CGTCACCCTC AACGGCAAGG TCCTGACCTC GCCGGCGATC
AACGTCACCG ATGCCGATCG CATCACGGTG GACGACGAGC CCCTGCCCGC CCGCGAGCGG
ACCCGGCTGT GGCTGCTGCA CAAGCCGCGC GGCGTCGTCA CCACTGCCCG CGACCCGGAG
GGCCGCCCGA CGGTGTTCGA CGGCCTGCCC GAAGAGCTGC CGCGAGTCGT CGCCATCGGC
CGGCTCGACA TCAACACCGA AGGGCTGCTG CTCCTCACCA ATGACGGGGG GCTGGCCAAG
GTGATCGCCC ATCCCGATAC CGGCTGGCTG CGCCGCTACC GGGTGCGCGC CTTCGGCGAC
GTGACCCAGC CCGATCTCGA CAAGCTGAAG AAGGGCCTGA CCGTCGATGG CATGGAGTAC
GGCCCGATCG AGGCGACCCT CGACCGGGCG CAGGGCGACA ACGTCTGGCT GACGCTCGGC
CTGCGCGAGG GCAAGAACCG CGAGGTCAAG CGCATCCTCG AGCATCTCGG CCTGTCGGTG
AACCGGCTGA TCCGGCTCTC GTTCGGGCCG TTCCAGCTCG GCGACCTCGA AGTCGGCCTC
GTCGAGGAGA TCCGCACCAA GGTTCTGAAG GACCAGCTCG GGAAGAACCT CGCCGAGCAG
GCCGGCGTCG ATTTCGAGAG CCCGGTGCGC GAGACGATCG CCCCCTTCGG CAGCCCGAAG
AAGGCCACCC GCGCCACGCA GGCGGCGCCC GCAGGACGGG GCCGTCAAGG CGCGCGCGAC
GAGGGCGCCT CGGAGGCCCG CTCGGGGTCT CGCGGCGGCT CGGCCGGCCG TCCGCCGCGC
GATCCCGCCC GCCCTGCCGC CCCCCGCGCT GGTGCGCGCC CGGCCCCGCG TCCCCCTTCC
CCGACCGTGT GGCGCGCCGA CGAGGAGACG CGGCCTCGCG CCTCGAAGGT GCCGCGCCGG
GGCATGGACC CCAAGACCGC CCGCGCGGCG GCGGCCGAGC GCGGCCGCGA GCGGGTCGGC
GCGATCCAGG CGGCCGGCGA GCGCCGGGTG CTGGTGGAGC GGCTTCAGCC CTCGCCCGAG
AAGCCCGCAC CCGAGCCGCA TCGCCGGGTC CGCTTCCGCA ACGAGGAGGA GCGGTCCGCG
CCCCGCGACA GGGCGCGCGA AGACAGGCCG CGCCAGGATC GGCCAGGTCA AGATCGGCCG
CGTGAAGACC GGCCGCGCAG CGAGGGACCG CGCGAGAACC GCGCCCGCGA CGAGCGGCCG
GGCCGGGACG AGTTCCGACG CGGCGCACCC GCGGGCGATG CCCGTCCCCG CCGTCGTGAG
GCCGGGGAGG CCGCACCGGC CGAGCGGCGC GGGCCGCCCC GCGAGCGTCC GTCCGATTTC
GAGGGGCGTC CGCCGCGTGA GCGGAGCGAG GGCCGGCCTC AGCGTGACTT CCATGGTGAC
TCCCGTGAGC GCGGCGAGGG CGCACCCCGC CGCGAGCGGC CGAGCGAAGG GCGCCCGCCC
GAGCGTCGCG GCCCCCCGCG CGACCGGCCC CGTGCCGCCG AAGGCGAGCG GCCGGCCCGC
CCCCCGCGCG GCGCCGAAGC GTCCGATCGT CCCGCCTTCC GCAAGGGCCC CGGCAAGGGG
CCCGGTGGTG GTGCAGGCAA GAGCTTCGGC GGCAAGCCCG GCTTCAAGGG CGGTGACCGC
GACGGCGCCA GGGGCGATTT CAAGGGTGGC GCGAAAGGCG GCCCGCGGGG CGACTTCAAG
CCCGGTGGCG GCGGCCGGCC CGGTGGGCGC CCGGGCGGAC GTCCCGGCGG CAAGCCCGGC
GGTGCCCCCG GTGGACGCCC CGGTGGTGGC GGCAAGCCGG CACCGCGCGG GGGCGGCCGT
CCGAGCCGTC CGCCGCGTGG CGAGGGCTAA
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| Protein sequence | MTDIPDPSPA VPADQPAAPE GERIAKAIAR AGIASRRDAE ALIEAGRVTL NGKVLTSPAI
NVTDADRITV DDEPLPARER TRLWLLHKPR GVVTTARDPE GRPTVFDGLP EELPRVVAIG
RLDINTEGLL LLTNDGGLAK VIAHPDTGWL RRYRVRAFGD VTQPDLDKLK KGLTVDGMEY
GPIEATLDRA QGDNVWLTLG LREGKNREVK RILEHLGLSV NRLIRLSFGP FQLGDLEVGL
VEEIRTKVLK DQLGKNLAEQ AGVDFESPVR ETIAPFGSPK KATRATQAAP AGRGRQGARD
EGASEARSGS RGGSAGRPPR DPARPAAPRA GARPAPRPPS PTVWRADEET RPRASKVPRR
GMDPKTARAA AAERGRERVG AIQAAGERRV LVERLQPSPE KPAPEPHRRV RFRNEEERSA
PRDRAREDRP RQDRPGQDRP REDRPRSEGP RENRARDERP GRDEFRRGAP AGDARPRRRE
AGEAAPAERR GPPRERPSDF EGRPPRERSE GRPQRDFHGD SRERGEGAPR RERPSEGRPP
ERRGPPRDRP RAAEGERPAR PPRGAEASDR PAFRKGPGKG PGGGAGKSFG GKPGFKGGDR
DGARGDFKGG AKGGPRGDFK PGGGGRPGGR PGGRPGGKPG GAPGGRPGGG GKPAPRGGGR
PSRPPRGEG
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