| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3245 |
|---|
| Symbol | |
|---|
| ID | 5835518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 3598700 |
|---|
| End bp | 3600490 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641369045 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001640703 |
|---|
| Protein GI | 163852660 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.532993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0328142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGCT ACCGGGCCCC GGTCGAGGAC ACCCTGTTCC TCCTCAACGA CGTTCTCGCG
ATCCACCGCT ACGACAATCT CCCCGGCTTC GCCGACGCCT CCGCCGATCT GGCCCAGGCG
GTGCTGAGCG AGGGCGGCAG GCTCGCGGGG GAAGTGTTCG CGCCGCTGAA CCTGTCCGGC
GACCGGGAGG GCTGCACCCG CCGGGAGGAT GGCAGCGTCG TGACGCCGAA GGGCTTCAAG
GCGGCCTACG ACGCCTACGC CGCCGGCGGC TGGATGGGCC TGTCGATCCC CGAGGAATTC
GGCGGCCAGG GCCTGCCGCA CGTGCTCAAC ACGGCGATGC AGGAATTCGT CTCCGGCGCC
AACCTTGCCC TCAGCATGTA TCCCGGCCTG ACGCAGGGGG CGATCGCCGC GCTGCTCGTC
CACGGCTCGC CCGAGCAGAA GGCGACCTAC CTGCCCAAGA TGGTCGAGGG CGCCTGGACC
GGCACCATGA ACCTCACCGA GCCGCATTGC GGCACGGATC TGGGCCTGCT GAAGACCAAG
GCGGTTCCCA ACGGCGACGG CTCCTACAGC CTTACCGGCA CCAAAATCTT CATCTCGGCG
GGCGAGCACG ACCTGTCGGA GAACATCGTC CACCTCGTCA TCGCCCGCAT CGAGGGCGCG
CCGTCCGGCA CCAAGGGCAT CTCGCTCTTC GTGGTGCCGA AGTTCCTCGT GAACGCGGAC
GGCTCCGTGG GCGAGCGCAA CGCGGTCGCC TGCGGCTCGA TCGAGCACAA GATGGGCATC
CACGCCAACT CCACCTGCGT GATGAACTAC GACGGGGCGA AGGGCTGGCT CGTCGGCCAG
GAGAATCGCG GTCTGGCCGC GATGTTCGTG ATGATGAACG AGGCCCGCCT CGCCGTCGGC
GTCCAGGGGC TCGGCCAGTC CGAGGCTGCC TATCAGAACG CGGTCACCTA CGCGCAGGAG
CGTCTCCAGG GCCGCTCGCT CACCGGCGCG AAGGCGCCGG ACAAGGTCGC CGACCCGATC
ATCGTCCACC CGGACGTGCG CCGCACGCTG ATGCAGATCC GCGCCTTCAA TGAGGCCGCG
CGCGCGCTCA TGCTCTGGAC CGCCCTCAAC TCCGACATCG CCCACCGCTC GCAGGACGCG
GCCGAGCGGC AGGCGGCCGA GGACATGCTC GGCCTGATGA CCCCTGTGGT GAAGGGCGTG
CTGACCGACC GGGGCTTTGC CAACGCAGTC GAGGCGCAGC AGATGTTCGG CGGCCACGGC
TATGTCGAGG AATGGGGCAT GTCGCAGTTC GTGCGCGATG CCCGCATCGC CATGATCTAC
GAGGGCGCCA ACGGCATCCA GGCGATGGAT CTGATCGGCC GCAAGCTGCC CAAGGATGGC
GGCCGGGCGA TGATGGCCTT CCTCACCGAA GTGCAGACCT TCATCAAGGA CCACGGCGAG
GACGAGGGGA TGAAGCCCTT CGTGGCGCCG CTCCAGCCGG CGCTGAACGA TCTCCAGGCC
GCGGTGATGT GGCTGATGCA GAACGCCTTC TCGAAGCCCG ACAACGCGGG CGCCGCCGCC
ACCGACCTGA TGCACCTGCT GGGGCAGGTC GTGCTGGGCT ACATGTGGGC CAAGATCGCG
CGGGCGGCGC TCGCCAAGAA GGCGGAGGGC GCCGACGTCG AGCGGATGGA TGCCAAGCTC
GTGCTCGGCC GTTTCTTCAT GGAGCGGATG CTGCCGGAGA CGAGCCTTCG CCTCGCCCGG
ATCAAGGCCG GCGCCGAGAC GACCATGGCG CTGCCCGCCG AGGCGTTCTA A
|
|---|
| Protein sequence | MPSYRAPVED TLFLLNDVLA IHRYDNLPGF ADASADLAQA VLSEGGRLAG EVFAPLNLSG
DREGCTRRED GSVVTPKGFK AAYDAYAAGG WMGLSIPEEF GGQGLPHVLN TAMQEFVSGA
NLALSMYPGL TQGAIAALLV HGSPEQKATY LPKMVEGAWT GTMNLTEPHC GTDLGLLKTK
AVPNGDGSYS LTGTKIFISA GEHDLSENIV HLVIARIEGA PSGTKGISLF VVPKFLVNAD
GSVGERNAVA CGSIEHKMGI HANSTCVMNY DGAKGWLVGQ ENRGLAAMFV MMNEARLAVG
VQGLGQSEAA YQNAVTYAQE RLQGRSLTGA KAPDKVADPI IVHPDVRRTL MQIRAFNEAA
RALMLWTALN SDIAHRSQDA AERQAAEDML GLMTPVVKGV LTDRGFANAV EAQQMFGGHG
YVEEWGMSQF VRDARIAMIY EGANGIQAMD LIGRKLPKDG GRAMMAFLTE VQTFIKDHGE
DEGMKPFVAP LQPALNDLQA AVMWLMQNAF SKPDNAGAAA TDLMHLLGQV VLGYMWAKIA
RAALAKKAEG ADVERMDAKL VLGRFFMERM LPETSLRLAR IKAGAETTMA LPAEAF
|
|---|
| |