| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2754 |
|---|
| Symbol | |
|---|
| ID | 5831725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3085993 |
|---|
| End bp | 3087870 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641368554 |
|---|
| Product | pepF/M3 family oligoendopeptidase |
|---|
| Protein accession | YP_001640216 |
|---|
| Protein GI | 163852173 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1164] Oligoendopeptidase F |
|---|
| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGCC GAGCCGTTTT CGCCGCCCTG TCGCCGGACC TGCCGAGAGA GGCTGAGGAA
CTCGCGGCGG TGCACGGCGC GATCCAGGCG GTCGATCTCG GCGTGCTGCC GGAATGGGAC
CTCACCGACC TCTATCCGAG CATGGACGCG CCGGCCTTTC GCGAGGATCT CGACCGGGCC
GAGGCCGAGA GCCGAGCCTT CGCCGAACGT TATGCGGGCC GGATCGCCGA GATCGCGGCG
GGGCCGGATG CCTCGTCCGT CCTCGGCGAG GCGGTGCAGA CCTTCGAGCG GATCGAGGAT
CTGATGGGGC GGCTGATGTC CTATGCCGGT CTCGTCTATT CCGGCGACAC GACGGACGAG
ACCCGCGCCA AGTTCTACGG CGACACCCGC GAGCGGCTGA CCACGGCCTC GGGTGACCTG
CTGTTCTTCG GCCTGGAATT GAACCGCGTC GAGGATGCGG TGCTCGACGC GGCGATGGCG
GACGGGCCGC TGGCCCATTA CCGCCCCTGG ATCGAGGATC TTCGGCGCGA GAAGCCGCAC
CAGCTCGACG ACCGGACGGA GAAGCTGTTC CTCGACAAGT CGGTGACCTC GAACGCCGCC
TGGGACCGGC TGTTCAATGA GACGATCGCT TCGCTCCGCT TCTCGGTTCA GGGCGAGCGC
CTGACGCTGG AGCCGACGCT CAACAAGCTC GTCGACTCGG ACGGGGCGGT GCGCCAGGAG
GCGGCGCAGG CGCTCGGCGA GACCCTGCGG GCGAATCTGC GCATCTTCAC GCTGATCACC
AACACGCTGG CCAAGGACAA GGAGATCTCC GACCGCTGGC GCGGCTTCAA GGATGTGGCC
GATGCCCGCC ACCTCTCGAA TCGTGTTGAG CCGGAGGTCG TGGCCGCCAT GGTCGAGGCC
GTGCGTGCGG CCTATCCACG GCTCTCGCAC CGCTATTACC GGCTCAAGGC CAAGTGGTTC
GGCGTCGAGG CGCTGCCCTA TTGGGACCGC AACGCTCCGC TGCCGAAGGT CGAGCAGCGC
ACGATTCCCT GGGCCCAGGC CCGTGACACG GTGCTGGAGG CCTACGACGC CTTCTCGCCG
GATATGGCCG GCATCGCCAA AAAGTTCTTC GACGGCGGCT GGATCGATGC GCCGACCCGA
CCGGGCAAGG CACCCGGCGC CTTCGCGCAT CCGACCGTGC CCTCGGCTCA CCCCTACGTG
CTGGTGAATT ACCAGGGCAA GCCGCGCGAC GTAATGACTC TCGCGCACGA ACTCGGCCAC
GGCGTGCATC AGGTGCTCGC CGCCCCCAAC GGCGCGCTGA TGGCGCCGAC CCCGCTGACG
CTGGCCGAGA CCGCGAGCGT GTTCGGCGAG ATGCTGACCT TCCAGCGGCT GCTGGGCCAG
ACCACGGACC CGACCCAGCG CCGGGCGATG CTCGCGGCCA AGGTCGAGGA CATGATCAAC
ACGGTGGTGC GCCAGATCGC GTTCTATTCG TTCGAGCGGA AGGTCCACCT CGCCCGCGCC
AAGGGCGAGC TGACAGCCGA GCAGATCAAC GAACTTTGGA TGTCGGTGCA GTCCGAGAGC
CTCGGGCCGG CGATCACCCT CGATAAGGGC TACGAGCCGT TCTGGGCCTA CATCCCGCAC
TTCATCCACT CGCCGTTCTA CGTCTACGCC TACGCGTTCG GCGATTGTCT CGTGAACTCG
CTCTACGGCG TCTACGCTCG CGCCGAGCCC GGCTTCGTCG AGCGCTACTT CGCTCTGCTG
TCAGCCGGCG GCTCGAAGCC CTACGGCGAG TTGCTGAAGC CGTTCGGACT CGACGCCAGC
GATCCCGGCT TCTGGCAGAT CGGGCTGGGG ATGATCGAGG GGATGATCGC GGAGCTGGAG
GCGATGGAAC ACGATTAA
|
|---|
| Protein sequence | MSSRAVFAAL SPDLPREAEE LAAVHGAIQA VDLGVLPEWD LTDLYPSMDA PAFREDLDRA
EAESRAFAER YAGRIAEIAA GPDASSVLGE AVQTFERIED LMGRLMSYAG LVYSGDTTDE
TRAKFYGDTR ERLTTASGDL LFFGLELNRV EDAVLDAAMA DGPLAHYRPW IEDLRREKPH
QLDDRTEKLF LDKSVTSNAA WDRLFNETIA SLRFSVQGER LTLEPTLNKL VDSDGAVRQE
AAQALGETLR ANLRIFTLIT NTLAKDKEIS DRWRGFKDVA DARHLSNRVE PEVVAAMVEA
VRAAYPRLSH RYYRLKAKWF GVEALPYWDR NAPLPKVEQR TIPWAQARDT VLEAYDAFSP
DMAGIAKKFF DGGWIDAPTR PGKAPGAFAH PTVPSAHPYV LVNYQGKPRD VMTLAHELGH
GVHQVLAAPN GALMAPTPLT LAETASVFGE MLTFQRLLGQ TTDPTQRRAM LAAKVEDMIN
TVVRQIAFYS FERKVHLARA KGELTAEQIN ELWMSVQSES LGPAITLDKG YEPFWAYIPH
FIHSPFYVYA YAFGDCLVNS LYGVYARAEP GFVERYFALL SAGGSKPYGE LLKPFGLDAS
DPGFWQIGLG MIEGMIAELE AMEHD
|
|---|
| |