| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2593 |
|---|
| Symbol | ispH |
|---|
| ID | 5833809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 2909123 |
|---|
| End bp | 2910145 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641368392 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001640056 |
|---|
| Protein GI | 163852013 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCTG ACACCATCAA CCTCACCGCC GACCCGAACA GGGTCCCGCA TCCGGCCGTG
ACGGGCGACA AGCCGCCACT GGAGATCCTC CTGTGCGCCC CCCGCGGCTT CTGCGCCGGC
GTGGTGCGCG CCATCGACGT GGTCGAGCGG GCGCTGGCGA TCTACGGAGC GCCGGTCTAC
GTCCGCCACG AGATCGTCCA CAACAAATAC GTGGTCGAGA CCCTGAAGCG GAAGGGCGCC
GTCTTCGTGC GCGAGCTGGA CGAGGTGCCC GATAGCGGCG CCCCCGTCAT CTTCTCCGCC
CACGGCGTCG CCAAGACCGT GCCGCAGAAC GCCGATGCGC GCGGCCTCAC CACCATCGAC
GCGACCTGCC CGCTGGTGAC CAAGGTCCAC CGCGAGGCCG AGATCCATCA CAAGCGCGGG
CGCCACGTCC TGCTCGTGGG CCATTCCGGC CACCCGGAAG TCGTCGGCAC CATGGGCCAG
TTGCCCAAGG GTTCGATCAC CCTCGTCGAG GACATCGACC AGATCGATGC GCTGAACCCG
CCGGCCGACC AAGCGCTGGC CTGGGTGACG CAGACCACCC TGTCGATCGA CGACACCAAG
CATATCGTCG AGGCGCTGAA GGCCAAGTTC ACCGGCATTC ACGGTCCGCA CAAGGACGAT
ATCTGCTACG CCACCACCAA CCGCCAGGAA GCGGTCAAGG AAGTCGCGCC GCGGGTCGAT
GCCCTGATCG TGGTGGGTTC CTCGAACTCC TCGAACTCGC AGCGCCTGCG CGAAGTCGCC
GAGCGGGCCG GCTGTCCCAT CACCCGCCTC GTCCTGCGTG CCGAGGAGAT CGATTGGGAT
GCCTTCAAGG ACATCCGCCG CCTCGGCCTC ACCGCCGGCG CGTCCGCGCC GGAGGTTCTG
GTCGAAGAGA TCATCGACGC CTTCGCCGCG CGCTTCGACG TGACGGTGGA TCAGGTGTCG
GTCACCGTCG AGGACATGTC CTTCCCGCTG CCGCGTGAGC TGCGCAGCGA AGCCGCCGAG
TAG
|
|---|
| Protein sequence | MSADTINLTA DPNRVPHPAV TGDKPPLEIL LCAPRGFCAG VVRAIDVVER ALAIYGAPVY
VRHEIVHNKY VVETLKRKGA VFVRELDEVP DSGAPVIFSA HGVAKTVPQN ADARGLTTID
ATCPLVTKVH REAEIHHKRG RHVLLVGHSG HPEVVGTMGQ LPKGSITLVE DIDQIDALNP
PADQALAWVT QTTLSIDDTK HIVEALKAKF TGIHGPHKDD ICYATTNRQE AVKEVAPRVD
ALIVVGSSNS SNSQRLREVA ERAGCPITRL VLRAEEIDWD AFKDIRRLGL TAGASAPEVL
VEEIIDAFAA RFDVTVDQVS VTVEDMSFPL PRELRSEAAE
|
|---|
| |