| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1672 |
|---|
| Symbol | |
|---|
| ID | 5832220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 1885359 |
|---|
| End bp | 1887446 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641367471 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_001639142 |
|---|
| Protein GI | 163851099 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.487392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGACG GGCTGAGTTT CCTGCCGACC GGGACCGGCA GCTCCGCCGA GCCGCGGAGC
GCCCGCACTG AGCCCGATCC GGTTCGGGCC AAGATCCTGA TCGTCGATGA CGATCAGCGC
AATCTCCTCG CCGCCTCCGA GGTCCTCGCC GATCCGGCGA TCGACCTCGT GCTGGCGAAC
TCGCCCGAGG AAGCCCTGCG GCAGGCGCTC CGGGAGGATT TCGCCCTGAT CCTGCTCGAC
GTGCAGATGC CGCGCATGGA CGGCTACGAG GTCGCCTCCC TAATCCGCAG CCGCTCGCGC
ACGTCCCGTG TCCCGATCCT GTTCCTCACG GCCCACAACA AGGAGGACAT CCACATCTTC
CGCGGATACT CCGCCGGAGC GGTGGACTAC GTATTCAAAC CCATCCAGCC TCTGGTCCTC
AAATCGAAGG TCGATGTCTT CGTCGATCTG TACCTGAAGA CAGCGGAGAT CCAGCGCAAG
GCGGCGGCCG AGAAGCAGCT GCTCCTGGAA AACCTGCGCG TACGGGGCGA GAAGCTTGCC
GCCGAGCAGG CTCTGCGCAG GCGTGAGGAA CATCAGGCCG CTGTCCTGCG CGGCCTCCCC
ATTGCGCTCT ACACCTCGCC ATTCAGTGGA GACGATCGAC GGCTTCACTT CACGAATGAC
AGCATCGAGC GCATCACCGG CTTCTCGCGC GAGGCCTTTG CTGCCTCAAA CCTCTGGGGG
GAGCAGCTTG AACCGGATGA CAGGGAGAGG ATCTCTGCGG ATTTGAGCAC GGTCTCGGAA
TCCGGCGCGG TAACTCTCGA ATATCGCTGG CGCAACGCAG ACGGCAGGGA GCGGCACATT
CTCGATCAGA TCGTGATCAA CGGTGATGAG AATGGTACGC CGGTCGAACT GTTTGGGATG
TGGTTCGACG TGACAGAGCG CAAGGAGCTT GAACTCAGCT TGCAGCATGC GTCAAAGCTT
GAAGCGGTTG GCCGTCTGAC AGGCGGTATT GCGCACGACT TCAACAATAT GCTGAGCATC
GTGATCGGCA ACCTTGATTT GGTGAAGAGC TCGTTGTCGG GCAACGAGAA AGCGCTCCGC
CGCATCGAGA GCGCCATCGA GGGAGCCCAT CGCTGCGCTG AACTGACCAG CCGGCTGCTG
GCCTTCTCCC GGCGCTCTCC TCTCCAGCCC AGAGCGTTGG ACTTCACGAG CTTCATACCT
GGCCTGATAA AGCTCCTAGA GCGCACTCTT GGGGAGCGGA TTGCGATCTC CGCGGACCTG
GAGGATGGAC TGCCGGAAGT CTGCGTTGAT CACGCTCAGT TCGAGGCCGC CCTCATCAAC
CTCGCTGTGA ATGCGCGGGA CGCGATGCCA GACGGGGGGA CCTTGGGCAT TCGCATCAAG
CGTCATGAGG CCGACGCGCA GGAGGACTCC GAGCAGGTGC ACTCCGTCGA GATCGCGGTC
ACGGACTCGG GCACAGGGAT GTCTCCAGCC GTCCTCGCTC GCGTATTCGA ACCGTTCTTC
ACGACCAAGG AGGCCGGTAA AGGCACTGGG CTCGGTCTGA GCATGGTCTA CGGTTTCGTA
CAGCAGAGCG GCGGAACCAT CGCCGTTGAC AGCAATCCTG ACCAAGGCAC CCGGTTCGTT
ATTACGTTGC CCGTGCTCGC CCAGCGGAGT TTTTCGTCGG AGGAAATGGA TCCAGGCAAC
GCCCCCGGAC CGCAGAACGC GATGAATGGT GCAGGGAGAG CCGTGCTCGT CGTCGAGGAC
GATGCCGATG TCCGCTTTAC GGTTGTCTCG ACTTTTGAAG CACTTGCATT CAAAGTTTTC
AGTGCGCAGG ACGTCGACGA GGCCCTCCGC CTCCTGCAAA TAGAGTCGAA CATTTCTCTC
GTTTTCAGTG ACGTGAACAT GCCTGGCGCG ATGAACGGCA TCGAGCTTGG GCACATCATC
CGCCAGCGAT GGCCGGACAT GCCAATTTTG CTGTCGTCCG GCTACCTTCA AGAAGATCAG
GACACGAACG GCTTTTCGTT GCTGCAGAAA CCGTATCGCG CGACTGAGTT GGTCGAAACC
CTACGTGGTC TGCTCAGCAA TGCGCATGGG ACAATGCCAA TCGAATAA
|
|---|
| Protein sequence | MKDGLSFLPT GTGSSAEPRS ARTEPDPVRA KILIVDDDQR NLLAASEVLA DPAIDLVLAN
SPEEALRQAL REDFALILLD VQMPRMDGYE VASLIRSRSR TSRVPILFLT AHNKEDIHIF
RGYSAGAVDY VFKPIQPLVL KSKVDVFVDL YLKTAEIQRK AAAEKQLLLE NLRVRGEKLA
AEQALRRREE HQAAVLRGLP IALYTSPFSG DDRRLHFTND SIERITGFSR EAFAASNLWG
EQLEPDDRER ISADLSTVSE SGAVTLEYRW RNADGRERHI LDQIVINGDE NGTPVELFGM
WFDVTERKEL ELSLQHASKL EAVGRLTGGI AHDFNNMLSI VIGNLDLVKS SLSGNEKALR
RIESAIEGAH RCAELTSRLL AFSRRSPLQP RALDFTSFIP GLIKLLERTL GERIAISADL
EDGLPEVCVD HAQFEAALIN LAVNARDAMP DGGTLGIRIK RHEADAQEDS EQVHSVEIAV
TDSGTGMSPA VLARVFEPFF TTKEAGKGTG LGLSMVYGFV QQSGGTIAVD SNPDQGTRFV
ITLPVLAQRS FSSEEMDPGN APGPQNAMNG AGRAVLVVED DADVRFTVVS TFEALAFKVF
SAQDVDEALR LLQIESNISL VFSDVNMPGA MNGIELGHII RQRWPDMPIL LSSGYLQEDQ
DTNGFSLLQK PYRATELVET LRGLLSNAHG TMPIE
|
|---|
| |