| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1587 |
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| Symbol | holA |
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| ID | 5831815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 1769943 |
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| End bp | 1770974 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641367385 |
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| Product | DNA polymerase III subunit delta |
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| Protein accession | YP_001639057 |
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| Protein GI | 163851014 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1466] DNA polymerase III, delta subunit |
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| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0083136 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGGCGG TCAAAGCCGG CGATGTCGAG GGGCTGGTCC GGCGCGGCCC CGATCCGCGC
ATTGCGGTGG TTCTGGTCTA CGGGCCGGAT GTCGGCCTCG TCGCTGACCG GGCGATGCGG
CTGGTCCGAG GGATGGTCGC CGACCCCGAC GACCCCTTCG CGCTCATCAG AATCGAGGGC
GACACCCTTG CCTCTGACCC GGGCCGCTTG GTCGACGAGG CCGGCACCGT CGGCCTGTTC
GGCGGCAGCC GCACGATCTG GGTCCGCTCC GGCAGCCGCA ATTACGCGCC GGCCGTCGAT
GCGGTGCTGA AGGCGCCGAC CGAAGGCGCC CGCATCGTCG TGGAGGCGGG CGACCTCGCC
CGCTCCGCCC CCCTGCGCAC ACTGTGCGAG GGATCGCCCA AGGCGCTCGC CCTGCCCTGC
TACCCCGACG ACGAGCGCAC GCTCGCCGAC CTAATCGAGC GCACGCTGCA GGAGGACGGG
CTGCGCATCG ACCGCGACGC CCGCGACCTG CTGACGGGCA GCCTCGGCAG CGACCGCCGT
GCCAGCCTGT CCGAGATCGG TAAGCTCGCC CTCTACGCCC GCGGCCAGGG AAGCGTCGGC
GTGGACGACG TCGAGGCGAT CGTCAGCGAT GTCGGGGCGA GCGTCCTCAA CGCGCTGATC
GACGCGGCCT TCGCCGGCCG CGCCAGCGAG GCCGAGCGCG AGTATCGCCG CTTCCGCCAC
GAGGGGATGG ACCCCTCGGC GATGCTCGGC GCCGGGTTGC GCCACGCGCT CACCCTGCTC
TCCCTACGCC TCGACAATCC GCGCGGCAGC GCCAGCCAGA TCGTCGCCAA TTGGCGCGGC
CTGCATTTCC GCCGCAAGGC ACTGGCCGAA ACCCAGCTCG CCCGCTGGTC GGCACCGGGG
CTGCAACAGG CCGTGGCGTG GCTCCAGGAC GCGGTGCTCG CCTGCCGCCG CTCGGAGCCG
GACCTTGCCC ACGCCCAAGC TCAGGGCGTG TTCCTGCGGA TCGCCATCGA GGCCGCGCGG
CGGCGCGCCT GA
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| Protein sequence | MTAVKAGDVE GLVRRGPDPR IAVVLVYGPD VGLVADRAMR LVRGMVADPD DPFALIRIEG
DTLASDPGRL VDEAGTVGLF GGSRTIWVRS GSRNYAPAVD AVLKAPTEGA RIVVEAGDLA
RSAPLRTLCE GSPKALALPC YPDDERTLAD LIERTLQEDG LRIDRDARDL LTGSLGSDRR
ASLSEIGKLA LYARGQGSVG VDDVEAIVSD VGASVLNALI DAAFAGRASE AEREYRRFRH
EGMDPSAMLG AGLRHALTLL SLRLDNPRGS ASQIVANWRG LHFRRKALAE TQLARWSAPG
LQQAVAWLQD AVLACRRSEP DLAHAQAQGV FLRIAIEAAR RRA
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