| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1449 |
|---|
| Symbol | fumC |
|---|
| ID | 5835738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 1620296 |
|---|
| End bp | 1621837 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641367249 |
|---|
| Product | fumarate hydratase |
|---|
| Protein accession | YP_001638921 |
|---|
| Protein GI | 163850878 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0114] Fumarase |
|---|
| TIGRFAM ID | [TIGR00979] fumarate hydratase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.352432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGCA GGGACATCCT CAAGACCGGA CTGCTCACGT CGATCGGCTT GGCGGCCGGT
GCGACAATCC CGAAGGTGGC GGCCGCGGAG ACCGGCAAGG CCGGCGTGCA ACCCGCGGGG
ATTCCTGCGA CGGACGGCGG CGAGTGCTTC CGCGTCGAGA AGGACAGCAT GGGTGAGGTG
AAGATCCCCT GCGACAAGCT GTGGGGCGCC CAGACGCAGA GGTCGATCGA GAATTTCGAC
ATCGGGATCG AGCGGATGCC GCGTGAGCTC GTGTCGAGCT ACGCGATCCT GAAAAAGGCC
GCCGCCAACG TCAACTTCGC GGATGGCCGC CTCGGCGAGA CCCAGCACAA GCTCATCGTT
CAGGTCTGCG ACGAGATTCT GGCCGGACAG CACGCGGAGA TGTTTCCGCT GCACGTCTGG
ATGACGGGCA GCGGCACCCA GTTCAACATG AACGTCAACG AGGTGATCGC GAACCGGTCC
AGCCAGATCG CCGGTCAGCC GCTCGGGAGC AAGAATCCCG TGCATCCCAA CGACCACGTC
AACATGGCCC AGTCGTCGAA CGACACCTTC CCGACGGCGA TGTACATGGC CGCCGCGATC
GCAGTCCGGC AGCGGCTCGC GCCTTCCATC ACCGAGCTGC GGGACAGCAT CGCCGCGAAG
GCGGAGGCGT GGAAGGACAT CATCAAGATC GGGCGCACCC ATATGCAGGA TGCCGTCCCG
ATCACGCTCG GGCAGGAATG GTCGGGCTAT TCGGGCATGC TGAGCGACAA CCTGGAGCGC
TTCGACGACG CGCTGAAGGG CGTGTACCGC CTGGCCCTCG GCGGCACCGC GGTCGGCACC
GGCATCAACG CGCAGCCGGG CTTTGCCGAG GCGAGCGCGA AGGAGATCGC GCGGCTGACC
GGCCTGCCCT TCGTCACGGC GCCCAACAAG TTCGTGGTGC AAGGCGCGCA CGACGCCATC
GTCCACCTGT CCGGCACGCT GCGGACGCTG GCCGGCTCGC TCTACAAGAT CGCCAACGAC
ATCCGGCTGC TGTCCTGCGG TCCGCGGGCG GGCCTGGCCG AGCTGATCAT TCCGGAGAAC
GAGCCGGGCT CCTCGATCAT GCCGGGCAAG ACGAACCCGA CCCAGGTCGA GGCGCTGACG
ATGGTCACCC TTCAGGTGAT GGGCAACGAC GTCAGCACCG GGTTCGGCGG CGCCAGCGGC
TCGCTTGAAA TGAACGTCTA CAAGCCGGTG ATGATCTACG ACGTCCTGCA GTCGATCCGG
CTGCTGAGCG ACGGCAGCCG CAACTTCCGC AAGCACCTCA TCGAGGGCAC GAAGCCCAAT
CACAAGCGGA TCAAGGACTA CGTCGATCGC TCGCTCATGC TGGTGACGGC TTTGGCCCCG
ACGATCGGCT ACGACAAGGC GTCGAAGATC GCTCACCTCG CGCACGAGGA GGATCTCAGC
CTGCGGGAGG CGGCGCTCAA GCTCGGCTAC GTCTCCGAGG CCGATTACGA CCGGATCGTC
GATCCGCGCA AGATGATCGC CCCCTACGTC GCCAAGAAGT AG
|
|---|
| Protein sequence | MERRDILKTG LLTSIGLAAG ATIPKVAAAE TGKAGVQPAG IPATDGGECF RVEKDSMGEV
KIPCDKLWGA QTQRSIENFD IGIERMPREL VSSYAILKKA AANVNFADGR LGETQHKLIV
QVCDEILAGQ HAEMFPLHVW MTGSGTQFNM NVNEVIANRS SQIAGQPLGS KNPVHPNDHV
NMAQSSNDTF PTAMYMAAAI AVRQRLAPSI TELRDSIAAK AEAWKDIIKI GRTHMQDAVP
ITLGQEWSGY SGMLSDNLER FDDALKGVYR LALGGTAVGT GINAQPGFAE ASAKEIARLT
GLPFVTAPNK FVVQGAHDAI VHLSGTLRTL AGSLYKIAND IRLLSCGPRA GLAELIIPEN
EPGSSIMPGK TNPTQVEALT MVTLQVMGND VSTGFGGASG SLEMNVYKPV MIYDVLQSIR
LLSDGSRNFR KHLIEGTKPN HKRIKDYVDR SLMLVTALAP TIGYDKASKI AHLAHEEDLS
LREAALKLGY VSEADYDRIV DPRKMIAPYV AKK
|
|---|
| |