| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1220 |
|---|
| Symbol | |
|---|
| ID | 5831870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1350595 |
|---|
| End bp | 1352100 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641367013 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_001638693 |
|---|
| Protein GI | 163850650 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.518526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.391466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAACC GTGTTTGGGG ACGGCTGATC GGCTCGCTCA CCGCCCTCGG CCTGATGGCG
GGGGCGGCCT CGGCGGTGAC GGCACCGATC CTCGTCGTCG ATGCCGAGTC CGGCAAGGTG
CTCTACAGCC AGGGCGCGAC CGACCCCTGG TATCCGGCCT CGATCACCAA GCTGATGACC
ACCTATGTCG CCCTCGACAT GGTGCGCCAG GGCAAGGTCT CCCTCGACAC GCTGCTGACG
GTGTCGCCGG CCGCTGCCGC CGAGCCGCCC TCGAAGATGG GCTTCAAGCC GGGCACGCAG
ATCACCCTCG ACAACGCCCT CAAGATCATC ATGGTCAAGT CGGCCAACGA CGTGTCCTGG
GCGATCGGCG AAGGGCTCGG CGGATCCGTC GAGGGCTTCG CCGACATGAT GAACGAGACC
GCGCACCGGA TCGGCATGCG CGAGAGCCGC TGGTACAACC CCAACGGCCT GCCCGAGCCG
CGGCAATGGA CGAGCGCCCG CGATATGGCG GTCCTGGCCC GCGCGCTGAT GCGCGACTTT
CCCAACCAGC AGAACCTGTT CTCGATCTCG GCGATCCAGT TCGGCAAGTC GGTGATGGCC
AACCATAACG GCCTGCTCGG GCGCTATCCC GGCGCCGACG GCATGAAGAC CGGCTTCATC
TGCTCGGGCG GCTTCAACGT GGTGGCGACC GCGACCCGCG GCGGCCGACG CATCATCACC
GTGGTGATGG GCCAGCCGAG CGCACGCGAG CGCGACATCA AGGCCGCCGA TCTGTTCGAT
TACGGCTTCG GCCAGTCGGC GGGCTGGACC GCGCCGACGC TCGAATCGCT GCCGCCCTCC
AACGTCGCCG CCCCGCCGGA CATGCGGCCC TACATCTGCG ACAAGCGCAA GCCGATGCCG
GTGGACGAAG GCCCCGGCGC GCTGACCGCG AGCGGCCCCG GCGCCAGCAG CGCGACGACG
CAGCTCCTCG GCTCGGCGAC CCCGGACGCC ACCAACCTCG CCTTCGCCGC GCTCAGCAGC
GCCAACGTCC GCGGACGCAC CCTGCCGCCG CGGGCGCCGC TTCAGCCGAT CCCGGTCTGG
ATCGGCAGCA GCCCCACGGA AGGCGCGATG GCGCTGGCTC GCGAGGAACA GGAGGCGCAG
GCGTCCAAGC AGGCGGCCCG TCAGGCCGCG CTGGAGGCTG CCCAGCGCAA GCGCGCGGAA
GCCAAGGCCA CCAAGGACGC CGCCCGAGAG GCCGCCAGGC AGGCCGCCTC GGAGAAAGCA
GCCAAGGCCC GCGCCGCCGC CGTGACCGCG CCCAAGCCCG CCACGAAGAC CGCCGCCGGC
CGGGAGAAGA GCGTGCCGGC CACGACCAGC GCCTACACGG CGGTGGAGCC CGCTCCGAAG
GCGGCCGCGA AGCCGGCGCA CAAGCCGGCC GCCAAGAAGC CCGAAGTGAC AAAGCCCGAG
GCGGCCAAGC CCGCCGCCAA GAAGGCGGAC AAGAAGCCCG CCAAGGCCAA GAACGACGAG
TCGTAA
|
|---|
| Protein sequence | MVNRVWGRLI GSLTALGLMA GAASAVTAPI LVVDAESGKV LYSQGATDPW YPASITKLMT
TYVALDMVRQ GKVSLDTLLT VSPAAAAEPP SKMGFKPGTQ ITLDNALKII MVKSANDVSW
AIGEGLGGSV EGFADMMNET AHRIGMRESR WYNPNGLPEP RQWTSARDMA VLARALMRDF
PNQQNLFSIS AIQFGKSVMA NHNGLLGRYP GADGMKTGFI CSGGFNVVAT ATRGGRRIIT
VVMGQPSARE RDIKAADLFD YGFGQSAGWT APTLESLPPS NVAAPPDMRP YICDKRKPMP
VDEGPGALTA SGPGASSATT QLLGSATPDA TNLAFAALSS ANVRGRTLPP RAPLQPIPVW
IGSSPTEGAM ALAREEQEAQ ASKQAARQAA LEAAQRKRAE AKATKDAARE AARQAASEKA
AKARAAAVTA PKPATKTAAG REKSVPATTS AYTAVEPAPK AAAKPAHKPA AKKPEVTKPE
AAKPAAKKAD KKPAKAKNDE S
|
|---|
| |