| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1152 |
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| Symbol | |
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| ID | 5835867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 1261855 |
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| End bp | 1263459 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641366945 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_001638625 |
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| Protein GI | 163850582 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0929318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGGAA GCCTCAAGGG CGCGTCGAGC ACACACTGGC GTACGCAGGA GATGTTCCTC
GTCCAAGAGG TCATGAACCT GATCGGCAAG GGCTTGCGCC TGGATCAGGT CGCGCGGGAG
ATGCTGCATC TCCTGTCCGA GATCGTCGGA CTGAACCGGG GACGGATCGT CCTGAAAGAC
CCTGACGGCA AGGGACACCG CATTGTCTAC GCCTATGGGC TGACCCGCGA GGAGGTCGCG
CGGGGCCGCT ACGCGCCGGG CGAGGGCATC ACCGGACGCG TCATTCAGGA CGGTCACCTC
ATCATCGTGC AGGACATCGA CAAGGACCCG ACCTTCCTTG GGCGGGCGGT GGCGCGGGCG
CAGCTTCCCC GCGGGGCCGT GTCGTTCCTG GCGCTGCCGA TCCGCGTTGA TCACCGGACG
GTCGGCGCCA TTGCCTGCCA CCGCATCCGC CATCGGGAGC GAGCGCTCTC GGACGACCTC
ACCATCCTGC GCATCATCGC CACGATGGTC AGCCAGTTGC TGACCCTGAA CGAGCGGGTG
GAGCAGAAGA CGCGGGCGCT CGAGGAACAC AACGACATGC TGGCGCGCGA GCTGCGCATC
AAGCGCGCCC GTTACGGCAT CATCGGAACC TCTCCCGCGC TGCTGCGCGC GCTTGCGCAG
GTGGAAAAGG TCGCGAGCGC GACCGCGAGC GTGCTGCTGC TCGGCGAGTC TGGGACCGGC
AAGGAACTCT TCGCCCGGGC GCTCCACCTC GCGAGCCCGC GGCGCGACCG GCCCTTCATC
AAGGTCAATT GCGCGGCGAT CCCCGACAGC CTGTTCGAAT CCGAGCTGTT CGGGCACGAG
CGCGGCGCCT TCACCGGGGC CGTCGATGCG CGGGCCGGCT GGTTCGAGCA GGCGAGCGGC
GGCACGATCT TCCTCGACGA GATCGGCGAG ATGCCGGCGG TCCTCCAGAC CAAGCTGCTG
CGCACCCTTC AGGAGGGGAC GGTCGTGCGC CTCGGCGGCA AGCGCGAGAT CCGGGTCGAT
ATGCGCCTCG TCGCCGCGAC GAACCGGGAT CTCGCCACCG AGGTCGCCCA TGGCCGCTTC
CGAGAGGACT TGTTCTACCG CCTCAACGTC GTGCCGATCA CCCTGCCTCC GCTGGCGGAG
CGGCGCAGCG ATATCCCCGA TCTGGTGCTG CACTTCCTCA CCCAGGCGAA CCAGAACAAC
CAGCGCAACG TCAACCTGAC CCAGGACGCG GTCACGCATC TCGCCCGCCA GTCCTGGCCG
GGCAACATCC GCCAGCTTGC CAACTTCATC GAGCGGCTCG TGCTGCTGGC GAGCGAAGGT
GTCTTGGACG TCGAGGACGT GCGGCCGATG CTCGAAGGCG CCGTCGTCAC GGCGCCCCCG
CTGCTCGCTC CCGCCTCGGC CCCGTTCTTC TCACCCGAAC GGGAAGCGGC GTTGCGCGCG
ATGGGCACCG TGCGCCCCTA CCTGCCGGCC GACTCGCACG GCCACGAACA GTTGCGCATG
GCCCTGGCCC AGGCCGGCGG CAACAAAACG CGGGCGGCCC AGCGGCTCGG GCTCACCGAA
CGCCAATTCT CCTATCGCTG GCGCAAGCTC CAGCCGGCAT CCTGA
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| Protein sequence | MDGSLKGASS THWRTQEMFL VQEVMNLIGK GLRLDQVARE MLHLLSEIVG LNRGRIVLKD
PDGKGHRIVY AYGLTREEVA RGRYAPGEGI TGRVIQDGHL IIVQDIDKDP TFLGRAVARA
QLPRGAVSFL ALPIRVDHRT VGAIACHRIR HRERALSDDL TILRIIATMV SQLLTLNERV
EQKTRALEEH NDMLARELRI KRARYGIIGT SPALLRALAQ VEKVASATAS VLLLGESGTG
KELFARALHL ASPRRDRPFI KVNCAAIPDS LFESELFGHE RGAFTGAVDA RAGWFEQASG
GTIFLDEIGE MPAVLQTKLL RTLQEGTVVR LGGKREIRVD MRLVAATNRD LATEVAHGRF
REDLFYRLNV VPITLPPLAE RRSDIPDLVL HFLTQANQNN QRNVNLTQDA VTHLARQSWP
GNIRQLANFI ERLVLLASEG VLDVEDVRPM LEGAVVTAPP LLAPASAPFF SPEREAALRA
MGTVRPYLPA DSHGHEQLRM ALAQAGGNKT RAAQRLGLTE RQFSYRWRKL QPAS
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