| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0228 |
|---|
| Symbol | |
|---|
| ID | 5832197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 248069 |
|---|
| End bp | 248590 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641366013 |
|---|
| Product | sigma-70 family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001637725 |
|---|
| Protein GI | 163849682 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCC TCATCGAGCC GCTCATTCCG GCCCTGCGCC GCTATGCCCG CGCGCTCCTG
CACAACCCGA CCGATGCGGA CGACCTCGTC CAGGATTGTC TGGAGCGCGC CATCGGCCGG
TGGCATCAGC GCCGGGCCGA CGGGGACGTG CGCACCTGGC TCTACGCTAT TCTTCATAAT
CTCGCCGTCA GCCAGATGCG CCAGCGCGCG CGCCGTGGCT CGTCCGTGGC CGTCGAGGAT
GCGCCGGAGG CGACTCTGGC CGTCGCCCCG AGCCAGGACG ACGGCCTGCT CCAGCGCGAC
GTGACGGCGG CTCTCGACGC TCTGCCGGAG GAGCAGCGCG GCGTACTGCT CCTCGTAAGC
GTGGAGGGGC TCTCCTACGC CGAGGCGGCG CAGGTGCTCG CCATCCCCAT CGGGACCGTG
ATGTCGCGCC TGTCGCGCGC GCGCGACCGG ATGATCCAGC TCATCGACGG TGAGAATGCG
TCCGCTCCCG TCAAGCGTCC GCTGCTCAGG AGGGTGAAGT GA
|
|---|
| Protein sequence | MIRLIEPLIP ALRRYARALL HNPTDADDLV QDCLERAIGR WHQRRADGDV RTWLYAILHN
LAVSQMRQRA RRGSSVAVED APEATLAVAP SQDDGLLQRD VTAALDALPE EQRGVLLLVS
VEGLSYAEAA QVLAIPIGTV MSRLSRARDR MIQLIDGENA SAPVKRPLLR RVK
|
|---|
| |