| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A3995 |
|---|
| Symbol | truB |
|---|
| ID | 5802473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 4248952 |
|---|
| End bp | 4249926 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641341780 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_001608288 |
|---|
| Protein GI | 162420546 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.866434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGTC CACGTCGTCG CGGCCGTGAC ATTAACGGCG TTTTGCTATT GGATAAGCCG
CTAGGCCTCT CTTCTAATGA CGTTTTGCAA AAAGTAAAAC GTCTCTTTAG CGCTAATCGC
GCTGGTCACA CGGGTGCTCT TGATCCATTA GCAACCGGTA TGTTGCCTAT TTGTCTGGGC
GAAGCAACTA AGTTTTCTCA ATTCTTACTC GATTCAGATA AACGTTACCG AGTGGTTGCT
CGGCTGGGGC AACGCACGGA TACCTCAGAT GCGGAAGGTG CGTTAATCAG TGAGCGTGAG
GTCAATCTTA CTCAAGCTCA GATCGATACT GCACTGGAGA GTTTCCGCGG TGAAAGCCAG
CAGATCCCCT CCATGTATTC TGCATTGAAA CATCAAGGTA AGCCTCTTTA CGAATATGCC
CGTCAGGGGA TTGAAGTCGA ACGTGAAGCT CGCAGCATTA CGGTTTACGA GTTGCTCTTC
ATCCGTTGGG AAGGCAATGA TCTGGAACTG GAAATTCACT GTTCGAAAGG AACGTACATT
CGTACCATCA TCGATGACTT GGGTGAATTA TTGGGTTGCG GCGCACATGT CAGTTATCTG
CGTCGCTTGC AGGTTGCGAC TTACCCGAGC GAACGGATGG TGACCCTAGA GCAGTTAACG
GCGATGGTTG AGGCTGCGCA GGCAGAGGGA CGCTCGCCAA ATCCAGAACT GGATTCGCTG
TTATTGCCGA TGGACAGTGC CGTTCTTAAT TTTCCTGAAG TCAATCTGTT ACCTTCCGTG
GCCGCTTATG TAAAACAGGG GCAACCGGTG CATGTGTCAG GTGCTCCCAG TGAAGGAATG
GTCCGAATCA CTGAAGGTAA AGAGCGTAAT TTCATTGGTA TTGGTACTAT CGCAGAAGAT
GGCCGCGTTG CCCCTAAACG TTTGGTTGTG GAAAGCGTGG AAGTAGAAAA TCTGCCAGTA
GAAAATAAAA AGTAG
|
|---|
| Protein sequence | MGRPRRRGRD INGVLLLDKP LGLSSNDVLQ KVKRLFSANR AGHTGALDPL ATGMLPICLG
EATKFSQFLL DSDKRYRVVA RLGQRTDTSD AEGALISERE VNLTQAQIDT ALESFRGESQ
QIPSMYSALK HQGKPLYEYA RQGIEVEREA RSITVYELLF IRWEGNDLEL EIHCSKGTYI
RTIIDDLGEL LGCGAHVSYL RRLQVATYPS ERMVTLEQLT AMVEAAQAEG RSPNPELDSL
LLPMDSAVLN FPEVNLLPSV AAYVKQGQPV HVSGAPSEGM VRITEGKERN FIGIGTIAED
GRVAPKRLVV ESVEVENLPV ENKK
|
|---|
| |