| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A3268 |
|---|
| Symbol | gspE |
|---|
| ID | 5801745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 3466340 |
|---|
| End bp | 3467851 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641341094 |
|---|
| Product | general secretion pathway protein E |
|---|
| Protein accession | YP_001607616 |
|---|
| Protein GI | 162418936 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00000698586 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000000000000127286 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA TTGAGTCTGA GTTCCATACT TTGCCATTAA CGTTTAGTTG GTCAAAGAGT
CATGGTGTGC TTATTCTGCC TATGGCACAG GGCAGTCAGT TGATTTGTCG TAAATCAGCG
ACATTGGAGG CTATACTTGA AGGGAATCGG GTGGCTCATA GTCCAATACT TTTTAATTTA
GTTACTGATG AAGAGTTTGA AAATAATTTA ACTGAACGCT ACCAAAATAA TTCGGCTGAC
CCATATCAGA CAATGAGCGT TATCAGCAAT GAGATCGACA TTTACTCTTT TGCTAACGAA
TTATCTGACG ATGATGATTT ATTGGATATA AATGATGAAG CACCTGTAAT AAAATTAATC
AATAGCATTC TGGTCGAAGC AATTAAAGAG TTAGCATCTG ATATACACAT AGAGTCTTTC
GATAAAAAAC TTACTGTAAG ATTTCGTATT GATGGTGTGT TAAGGAAAAT ATTGGAATTA
CAGCGCCATG TTGCACTATT ATTAGTGTCG CGTATAAAAG TCATGGCCAA ATTAGATATT
GCAGAAAAAC GTATTCCACA AGATGGGCGC ATAGCTCTAA ATTTAGCGGG TAGAGCATTG
GATGTTCGTG TTTCGGTATT ACCATCTAGC CATGGTGAAC GGGTCGTTAT GCGTTTGCTT
GACAAAAATA GCATTAAATT GGATTTACCC TCATTAGGTA TGTCGAAAGA TAACTGTATT
TCTATGAATA CGCAGGTACA TAAACCCCAT GGCATTATCT TGGTTGTTGG CCCAACGGGT
TCGGGTAAAA GCACTACGTT ATATGCTGCT TTAATGGGGA TTGACGCGAA TGAGAAAAAT
ATTATGACTG TAGAAGACCC TATTGAGTTC GACATACCTG GTATATCCCA AACGCAAGTA
AACCCAAAAA TTGAAATGAC ATTTGCTCGT AGCTTAAGGG CAATATTACG CCAAGATCCT
GACGTTATTC TTATCGGTGA AATTCGTGAT ATTGAAACGG CACAGATAGC GGTCCAAGCT
TCTCTAACCG GCCATTTAGT TCTATCTACA TTACATGCCA ACAGTGCGAT AGGTGCAGTG
ACCAGACTGA AGGATATGAA TGTAGAGGCA TTTATGCTTT CAAGTTCATT ATTGGCCATC
ATATCTCAGC GGTTGGTTAG AAGATTATGT ATAGCGTGTC GCCAAGAGTC GTCAGTGACG
GAGAAGGTAT TACAACGTCT GAATATTGAT GATAAATGCT CTTTGGTTGG TTCGGTGTAC
CGGGCTAAAG GTTGTAACAA ATGTAATCTT ACTGGTTATC GTGGACGTAT TGCTCTCCAT
GAATTTCTCG TAGTGGATAA CTTATTGCGG GGGGCTATTT ATAAAGGGCT AGGAGAGTTT
GAACTGGCTA AATTGGCCAG TGGGGCTATA AACAGCCTTC TATCTGATGG GATAAGCAAA
GTTATTGCAG GGTTAACCAC TATAGAGGAA CTGGTAAGAA TATGCCAAGA GGATGATAAT
GGCTGTATTT AA
|
|---|
| Protein sequence | MTDIESEFHT LPLTFSWSKS HGVLILPMAQ GSQLICRKSA TLEAILEGNR VAHSPILFNL
VTDEEFENNL TERYQNNSAD PYQTMSVISN EIDIYSFANE LSDDDDLLDI NDEAPVIKLI
NSILVEAIKE LASDIHIESF DKKLTVRFRI DGVLRKILEL QRHVALLLVS RIKVMAKLDI
AEKRIPQDGR IALNLAGRAL DVRVSVLPSS HGERVVMRLL DKNSIKLDLP SLGMSKDNCI
SMNTQVHKPH GIILVVGPTG SGKSTTLYAA LMGIDANEKN IMTVEDPIEF DIPGISQTQV
NPKIEMTFAR SLRAILRQDP DVILIGEIRD IETAQIAVQA SLTGHLVLST LHANSAIGAV
TRLKDMNVEA FMLSSSLLAI ISQRLVRRLC IACRQESSVT EKVLQRLNID DKCSLVGSVY
RAKGCNKCNL TGYRGRIALH EFLVVDNLLR GAIYKGLGEF ELAKLASGAI NSLLSDGISK
VIAGLTTIEE LVRICQEDDN GCI
|
|---|
| |