Gene YpAngola_A3100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpAngola_A3100 
SymbolmdtD 
ID5801574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pestis Angola 
KingdomBacteria 
Replicon accessionNC_010159 
Strand
Start bp3275556 
End bp3276953 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content54% 
IMG OID641340936 
Productmultidrug efflux system protein MdtE 
Protein accessionYP_001607464 
Protein GI162421494 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000024134 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAACGC AAGCAACATC TGTGCGATGG CAATTGTGGA TTGTCGCTTT CGGATTTTTT 
ATGCAGACGC TGGATACCAC CATCGTCAAT ACCGCCCTGC CCTCCATCGC AGCCAGTCTG
GGCGAAAATC CGTTACGGAT GCAATCGGTG ATTGTCTCGT ATGTCCTGAC CGTCGCGGTG
ATGTTGCCCG CCAGTGGTTG GCTGGCGGAC CGGATCGGCG TCAAGTGGGT GTTCTTCTCA
GCGATTATTC TGTTCACCTT CGGATCGCTG ATGTGCGCGC AATCAGCAAC ACTGAATGAA
CTGATCCTCT CCCGTGTGCT TCAGGGGGTG GGCGGCGCAA TGATGGTGCC CGTGGGCCGC
CTGACGGTGA TGAAAATCGT GCCACGCGAG CAATATATGG CGGCAATGGC GTTTGTCACA
CTGCCCGGCC AGATTGGGCC ATTAGTTGGC CCGGCGCTGG GCGGGTTTTT AGTGGAATTT
GCCAGTTGGC ACTGGATTTT CCTGATTAAC CTGCCTGTTG GTGTGATCGG CGCATTGGCG
ACCTTGCTGC TCATGCCTAA CCACAAAATG TCTACCCGGC GCTTTGATAT CAGCGGCTTT
ATCATGTTGG CAATCGGTAT GGCGACCTTA ACGCTGGCAC TGGACGGCCA CACGGGACTG
GGGTTGTCGC CGCTGGCCAT TGCGGGGTTG ATCCTGTGTG GCGTAATAGC ACTGGGCAGC
TATTGGTGGC ATGCACTGGG TAATCGTTTC GCACTGTTCT CACTGCACCT GTTCAAGAAT
AAAATCTATA CCCTTGGTTT AGTCGGGAGT ATGTCCGCCC GGATCGGCAG CGGCATGTTG
CCATTTATGA CGCCTATCTT TCTGCAAATC GGCCTAGGGT TTAGCCCATT CCACGCGGGG
CTGATGATGA TCCCGATGAT TATCGGCAGC ATGGGCATGA AGCGGATTAT CGTACAGGTC
GTCAACCGCT TTGGTTACCG GCGAGTCCTG GTCAACGCCA CATTATTACT GGCCGTCGTC
AGCCTGAGCT TACCGCTCGT GGCAATCATG GGTTGGACAC TGCTGATGCC AGTAGTGTTA
TTCTTCCAAG GCATGCTCAA CGCATTACGC TTTTCCACCA TGAATACCTT AACCCTAAAA
ACGTTACCAG ATCGTCTGGC TAGCAGCGGT AACAGCCTAT TGTCGATGGC GATGCAACTG
TCCATGAGTA TCGGGGTCAG TACTGCCGGA ATATTATTGG GTACCTTTGC TCATCATCAG
GTAGCCACCA ACACGCCTGC CACTCACAGC GCGTTCTTAT ACAGTTACTT ATGTATGGCA
ATCATTATCG CCCTACCCGC CCTGATATTT AACCGCGTTC CCCCGGATAC AGGAGCCAAT
CGTCATTTGG CCCGCTAG
 
Protein sequence
MVTQATSVRW QLWIVAFGFF MQTLDTTIVN TALPSIAASL GENPLRMQSV IVSYVLTVAV 
MLPASGWLAD RIGVKWVFFS AIILFTFGSL MCAQSATLNE LILSRVLQGV GGAMMVPVGR
LTVMKIVPRE QYMAAMAFVT LPGQIGPLVG PALGGFLVEF ASWHWIFLIN LPVGVIGALA
TLLLMPNHKM STRRFDISGF IMLAIGMATL TLALDGHTGL GLSPLAIAGL ILCGVIALGS
YWWHALGNRF ALFSLHLFKN KIYTLGLVGS MSARIGSGML PFMTPIFLQI GLGFSPFHAG
LMMIPMIIGS MGMKRIIVQV VNRFGYRRVL VNATLLLAVV SLSLPLVAIM GWTLLMPVVL
FFQGMLNALR FSTMNTLTLK TLPDRLASSG NSLLSMAMQL SMSIGVSTAG ILLGTFAHHQ
VATNTPATHS AFLYSYLCMA IIIALPALIF NRVPPDTGAN RHLAR