Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A2343 |
Symbol | topB |
ID | 5800813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | - |
Start bp | 2455323 |
End bp | 2457248 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641340228 |
Product | DNA topoisomerase III |
Protein accession | YP_001606772 |
Protein GI | 162421387 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000133374 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0757376 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACTGT TTATTGCCGA AAAACCCAGT TTAGCGCGAG CGATTGCAGA TATTTTGCCA AAACCGCATC GTCGAGGTGA TGGATTCATC GCCTGTGGTA ATGATCAAAT GGTGACCTGG TGTGTTGGTC ATTTACTCGA ACAAGCCCAG CCGGATGCTT ATGACAGCCG TTATGCACGT TGGTCATTAG CGGACTTACC GATCATTCCT GAAAAATGGC AGCTACAACC TCGTCCTTCC GTCAGCAAAC AACTCAATGT GATTAAGCAA CTGTTACAGC AAGCCGATGA AGTGGTCCAT GCTGGCGACC CGGATAGAGA AGGGCAACTG TTAGTTGATG AGGTGCTGGA TTATTTGGGA TTGGCCGCAG AGAAACGGCA AAATGTTCGT CGTTGCTTGA TTAACGATTT AAACCCACAG GCGGTTGAGC GTGCAGTGGA GCGCTTGCGT TATAACCGCG AGTTTATCCC GCTGTGTGTT TCTGCGTTGG CTCGAGCCAG AGCCGATTGG CTCTATGGCA TCAATATGAC TCGCGCCTAT ACCATTCTTG GGCGCAATGC GGGCTATGAC GGTGTTTTAT CCGTCGGGCG GGTACAAACG CCCGTATTGG GGCTGGTTGT TCGCCGTGAT GAAGAGATTG AAAGCTTCAT TCCCAAAGAT TTTTTTGAAG TTAAAGCCCA CATAGTGACG CCTGCAGACG AACGTTTTAT TGCTCTCTGG CAGCCGAGTG ACTCCTGCGA ATCTTATCAG GACGAAGAAG GGCGCTTGTT GCATCGGCCG CTTGCAGAAC ATGTTGTCAA TCGCATAACC GGCCAGCCCG CGCTGGTGAC ATCCTATAAT GATAAACGGG AATCGGAAAC GGCACCGTTG CCATTCTCCT TGTCTACATT ACAAATCGAA GCTGCAAAAC GTTTCGGCCT CAGTGCTCAG CAAGTATTGG ATATTTGCCA ACGGTTGTAT GAAACGCACA AATTGATTAC GTATCCCCGT TCGGATTGCC GATATCTACC TGAAGAGCAT TTTGCCGGGC GTCATTCGGT GCTTAATGCC ATTAGTCTTC ATCAGTCAGA CCTTTTGCCG CTTGAGGTCA TGGATAGTGA TCGGCGCAAC CGCTGCTGGG ATGATAAAAA AGTCGATGCG CACCACGCTA TTATCCCAAC CGCACGTGCC AGCAAAGTGA ATTTGACGAC GGATGAAGGC AAAGTATACC GGTTGGTGGC ACAGCAATAT CTGATGCAAT TCTGTCCAGA TGCACAGTTC CGTAAGTGTG TGATTGAATT GGATATCGCT GGCGGGAAAT TTATTGCCAA GGCACGCTTT TTGGCCGAGG CGGGATGGCG GACCTTACTG GGCAGTAAAG AGCGTGATGA AGAGAACGAA GGAGCGCCAT TGCCGGTGGT AGCCAAAGGG GCTGAATTAT TATGCGAACG CGGTGAGGTT GTTGAACGAC AAACTCAGCC ACCCCGGCCT TTCACCGACG CCAGTTTATT ATCGGCGATG ACAGGAATTG CGCGTTTCGT ACAGGATAAA GAACTGAAAA AAGTTTTGCG AGCCACCGAT GGCTTGGGTA CGGAAGCCAC TCGAGCAGGT ATTATCGAAC TGCTCTTCAA GCGCACTTTT CTCTTTAAGA AAGGGCGTTA TATACATGCC AGCCCTGCGG GACGCGCGTT GATTCATGCA TTACCGGATA TTGCGGCACG GCCAGATATG ACAGCACATT GGGAATCAAC GTTGACACAA ATCAGTGAAA AAAACTGCCG CTATCAAGAT TTTATGCAAC CACTGGTGAT GACATTGCAG GATTTAATTA GTCAGGCGAA ACAAAATCGT TCTCCACAGG TTTTCCGTGG GTTACCCGTC GGCCCTTCAG GGGCACCCAA GAAACGTAAA AAAATATCGT CTAAGGCCAA GGAGAGTAAA TCATGA
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Protein sequence | MRLFIAEKPS LARAIADILP KPHRRGDGFI ACGNDQMVTW CVGHLLEQAQ PDAYDSRYAR WSLADLPIIP EKWQLQPRPS VSKQLNVIKQ LLQQADEVVH AGDPDREGQL LVDEVLDYLG LAAEKRQNVR RCLINDLNPQ AVERAVERLR YNREFIPLCV SALARARADW LYGINMTRAY TILGRNAGYD GVLSVGRVQT PVLGLVVRRD EEIESFIPKD FFEVKAHIVT PADERFIALW QPSDSCESYQ DEEGRLLHRP LAEHVVNRIT GQPALVTSYN DKRESETAPL PFSLSTLQIE AAKRFGLSAQ QVLDICQRLY ETHKLITYPR SDCRYLPEEH FAGRHSVLNA ISLHQSDLLP LEVMDSDRRN RCWDDKKVDA HHAIIPTARA SKVNLTTDEG KVYRLVAQQY LMQFCPDAQF RKCVIELDIA GGKFIAKARF LAEAGWRTLL GSKERDEENE GAPLPVVAKG AELLCERGEV VERQTQPPRP FTDASLLSAM TGIARFVQDK ELKKVLRATD GLGTEATRAG IIELLFKRTF LFKKGRYIHA SPAGRALIHA LPDIAARPDM TAHWESTLTQ ISEKNCRYQD FMQPLVMTLQ DLISQAKQNR SPQVFRGLPV GPSGAPKKRK KISSKAKESK S
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