| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A2160 |
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| Symbol | oppD |
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| ID | 5800630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010159 |
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| Strand | - |
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| Start bp | 2257937 |
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| End bp | 2258938 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641340067 |
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| Product | oligopeptide transporter ATP-binding component |
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| Protein accession | YP_001606612 |
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| Protein GI | 162419070 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00241569 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0324737 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACTA TCAATAATCA CTCTACTGTT CAGTCCTCTG TATTGTTGGA GGTTAAAGAT
CTGACGGTGA CCTTCGGTAC ATCAGATGGT GATGTGACTG CGGTTAACGC ACTTAATTTT
GCCCTGCGAG CGGGTGAGAC ACTTGGCATT GTAGGCGAAT CTGGCTCAGG AAAATCGCAG
ACTGCCTTCG CTTTGATGGG GCTGTTGGCC AGTAATGGTC GGATAGGCGG CTCTGCGAAA
TTTAATGGCC GTGAAATTCT TAATCTGCCA GAAAAACAAT TGAATCGTTT GCGGGCCGAA
GAGATCGCTA TGATTTTCCA AGACCCAATG ACGTCGCTGA ACCCTTATAT GCGAGTGGGT
GAGCAGTTAA TGGAAGTACT GCAATTACAT AAGAAAATGA GTAAAAGCGA AGCATTTGAA
GAGTCTATCC GTATGCTTGA TGCAGTAAAA ATGCCCGAAG CACGTAAACG TATGCGCATG
TATCCACATG AATTTTCTGG GGGTATGCGT CAGCGGGTCA TGATTGCGAT GGCACTACTG
TGCCGCCCTA AGTTATTGAT TGCTGACGAA CCGACAACGG CATTAGATGT TACTGTTCAG
GCTCAAATCA TGACGTTGCT AAATGAACTT AAAAGAGAGT TCAACACCGC AATTATCATG
ATCACCCATG ACTTGGGGGT CGTTGCAGGG ATTTGTGACA AAGTCTTAGT AATGTATGCG
GGCCGAACAA TGGAATACGG CCAAGCACGC GATATTTTTT ATCATCCAAG CCACCCCTAT
TCGATAGGTT TATTGAATGC CGTTCCTCGC CTTGATGCTG AAGGTGAATC TCTGATAACC
ATACCGGGTA ATCCACCCAA TTTACTTCGC TTGCCCAAAG GGTGTCCATT CCAGCCCCGT
TGCCAATATG CCATGGATCG TTGTTCAACG GCACCTGTGT TGGAACATTT TGGTGAAGGC
CGCTTACGCG CCTGTTATAA GCCGGTAGGG GAATTAGTAT GA
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| Protein sequence | MTTINNHSTV QSSVLLEVKD LTVTFGTSDG DVTAVNALNF ALRAGETLGI VGESGSGKSQ
TAFALMGLLA SNGRIGGSAK FNGREILNLP EKQLNRLRAE EIAMIFQDPM TSLNPYMRVG
EQLMEVLQLH KKMSKSEAFE ESIRMLDAVK MPEARKRMRM YPHEFSGGMR QRVMIAMALL
CRPKLLIADE PTTALDVTVQ AQIMTLLNEL KREFNTAIIM ITHDLGVVAG ICDKVLVMYA
GRTMEYGQAR DIFYHPSHPY SIGLLNAVPR LDAEGESLIT IPGNPPNLLR LPKGCPFQPR
CQYAMDRCST APVLEHFGEG RLRACYKPVG ELV
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