| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1979 |
|---|
| Symbol | ompF |
|---|
| ID | 5800449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 2060928 |
|---|
| End bp | 2062010 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641339902 |
|---|
| Product | outer membrane protein F |
|---|
| Protein accession | YP_001606452 |
|---|
| Protein GI | 162420856 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000261923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.629044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGC GCAATATTCT TGCAGTAGTA ATCCCAGCTC TGTTAGCCGC TGGTGCAGCT
AATGCAGCAG AAATCTATAA CAAAGATGGC AACAAACTTG ACCTGTACGG TAAAGTTGAC
GCACGTCACT CTTTCTCCGA TAACAACAAA CAAGATGGCG ACAAGTCTTA CGTTCGTTTC
GGCTTCAAAG GTGAAACCCA AATTACTGAC CAACTGACCG GTTACGGCCA GTGGGAATAC
AACATTCAAG CAAACAACGC TGAAGACACA GGCGCTCAAG ACGGCAACGC AACCCGTCTG
GGCTTTGCTG GTCTGAAATT TGCTGAATTC GGTTCATTCG ACTACGGCCG TAACTACGGC
GTAATCTATG ACGTTAACGC ATGGACTGAC ATGCTGCCAG TGTTCGGTGG TGATTCAATC
TCCAACTCTG ACAACTTCAT GACTGGCCGT TCTACTGGCC TGGCAACTTA CCGTAACAAC
AATTTCTTCG GTCTGGTTGA CGGCCTGAAC TTTGCCCTGC AATACCAAGG CAAAAATGAC
CGTTCTGAAG TCAAAGAAGC TAACGGTGAC GGCTTCGGTA TCGGTTCTAC TTATGATATC
GGCAATGGCA TTAACTTCGG TGCTGGTTTC TCTTCTTCAA ACCGTACTCT TGATCAAAAA
TATGGTTCTA CCGCTGAAGG CGACAAAGCT CAGGCATGGA ACGTTGGCGC TAAATACGAC
GCAAACAACG TATACCTGGC TGTAATGTAT GCTGAAACTC AGAACCTGAC TCCATACGGT
AGCTTCTCTG ATACTATCGC TAACAAGACT CGCGATATCG AGATCACTGC ACAATATCAG
TTCGACTTCG GTCTGCGCCC ATCACTGGGT TATGTTCAGT CCAAAGGTAA GGACCTGAAC
GATGTTGATG CCAACCATGA TCTGCTGAAA TATGTTTCTG TTGGTACTTA CTACTACTTC
AACAAAAACA TGTCTACCTA TGTTGATTAC AAAATCAACT TGCTGGACGA AGACGAGTTC
ACAATCGCAA ACGGTCTGAA CACCGACAAC GTTGTTGCTG TTGGCTTGGT TTACCAGTTC
TAA
|
|---|
| Protein sequence | MMKRNILAVV IPALLAAGAA NAAEIYNKDG NKLDLYGKVD ARHSFSDNNK QDGDKSYVRF
GFKGETQITD QLTGYGQWEY NIQANNAEDT GAQDGNATRL GFAGLKFAEF GSFDYGRNYG
VIYDVNAWTD MLPVFGGDSI SNSDNFMTGR STGLATYRNN NFFGLVDGLN FALQYQGKND
RSEVKEANGD GFGIGSTYDI GNGINFGAGF SSSNRTLDQK YGSTAEGDKA QAWNVGAKYD
ANNVYLAVMY AETQNLTPYG SFSDTIANKT RDIEITAQYQ FDFGLRPSLG YVQSKGKDLN
DVDANHDLLK YVSVGTYYYF NKNMSTYVDY KINLLDEDEF TIANGLNTDN VVAVGLVYQF
|
|---|
| |