Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A1959 |
Symbol | msbA |
ID | 5800429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | + |
Start bp | 2038372 |
End bp | 2040120 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641339882 |
Product | lipid transporter ATP-binding/permease protein |
Protein accession | YP_001606432 |
Protein GI | 162418154 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.278742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.389818 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAATG ATAAAGATCT ATCCACTTGG CAGACCTTTC GTCGCCTATG GCCGACGATC TCCCCTTATA AGGCCGGTCT TATCGTTGCG GCGATAGCAT TAATCCTTAA TGCGGCCAGT GATACTTTTA TGCTGTCGTT ACTGAAACCC TTGCTAGACG ATGGGTTTGG CAATTCGAAC AGTTCAATTC TGAAATGGAT GCCTTTGGCT GTTATCGGCC TAATGGTAGT GCGTGGCGTG ACTGGTTTTG TCTCAAGCTA CTGTATTTCT TGGGTGTCGG GTAAAGTTGT AATGCATATC CGCCGCCGCT TATTCAGCCA TATGATGGGT ATGCCTGTTT CTTTCTTTGA CCAACAATCG ACGGGTACCT TATTGTCGCG CATTACTTAC GACTCTGAGC AGGTAGCTGC GTCCTCCTCC AGTGCGTTGG TGACTGTGGT GCGGGAAGGG GCCTCTATCA TTGGTTTGTT CATTATGATG TTTTATTACA GTTGGCAGTT GTCGCTGATT TTAATCGTCA TTGCACCCAT TGTGTCTATT TCGATCCGTC TGGTATCCAA ACGTTTTCGT AATATCAGTA AGAATATGCA AAATACTATG GGGGAAGTGA CCACCAGCGC TGAGCAAATG CTCAAAGGGC ATAAAGAAGT TTTGATCTTT GGTGGCCAGA AGGTTGAAAC CGAGCGCTTT GATGCTGTCA GTAACCGTAT GCGCCAGCAG GGGATGAAAC TGGTTTCTGC CTCTTCTATT TCAGATCCCA TCATTCAATT GATTGCCTCT TTTGCATTGG CACTTGTACT TTATGCGGCA AGTTTTCCAA GTGTAATGGA AACGTTGACT GCCGGTACTA TCACCGTTGT ATTCTCTGCG ATGATTGCTC TGATGCGTCC ATTGAAGTCG CTGACAAATG TTAATACCCA GTTCCAACGC GGTATGGCAG CCTGTCAGAC GTTATTCAGC ATATTGGATA TGGAGCAGGA GAAAGACGAA GGCAAGCTTG AAGTTGAACG GGCGAAAGGT GATATAGAAT TCCGCCATGT GACTTTCTAT TATCCCGGTA AGGATACGCC TGCGCTAAAT GATATCAATA TACACCTTGA AGCGGGCAAG ACCGTGGCAT TGGTTGGGCG CTCAGGTTCA GGTAAATCCA CCATTGCTAA CTTACTGACC CGTTTCTACG ATGTCAGTGA AGGGAGCATT TTGTTAGATG GGCATGATCT GAGAGATTAC CGGTTAGGTG CCTTACGTAA TCAAGTGGCG TTGGTTTCAC AAAATGTTCA CTTATTCAAC GATACTGTCG CTAATAATAT TGCTTACGCC CGTAATGAAC AGTACAGCCG TGCTGAAATT GAAGAAGCCG CTCGAATGGC GTATGCCATG GACTTTATCA ATAAGATGGA ACACGGTTTG GATACCGTTA TTGGCGAGAA CGGTATCATG CTCTCCGGTG GTCAACGTCA GCGTATCGCT ATCGCGCGTG CTTTACTACG GAACTGCCCG ATATTGATTT TGGATGAAGC GACTTCGGCG CTGGATACAG AATCAGAGCG AGCTATTCAG GCCGCTTTAG ATGAGTTACA AAAAAACCGA ACTTCTCTGG TGATCGCCCA TCGCTTATCC ACTATCGAGA AAGCAGATGA GATAGTGGTC ATTGAAGACG GGCGTATTGT GGAGCGTGGT GTACACGCTG AATTGCTGGT CCAGCAAGGT GTCTATGCGC AGCTCAACCG TATGCAGTTT GGCCAATGA
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Protein sequence | MMNDKDLSTW QTFRRLWPTI SPYKAGLIVA AIALILNAAS DTFMLSLLKP LLDDGFGNSN SSILKWMPLA VIGLMVVRGV TGFVSSYCIS WVSGKVVMHI RRRLFSHMMG MPVSFFDQQS TGTLLSRITY DSEQVAASSS SALVTVVREG ASIIGLFIMM FYYSWQLSLI LIVIAPIVSI SIRLVSKRFR NISKNMQNTM GEVTTSAEQM LKGHKEVLIF GGQKVETERF DAVSNRMRQQ GMKLVSASSI SDPIIQLIAS FALALVLYAA SFPSVMETLT AGTITVVFSA MIALMRPLKS LTNVNTQFQR GMAACQTLFS ILDMEQEKDE GKLEVERAKG DIEFRHVTFY YPGKDTPALN DINIHLEAGK TVALVGRSGS GKSTIANLLT RFYDVSEGSI LLDGHDLRDY RLGALRNQVA LVSQNVHLFN DTVANNIAYA RNEQYSRAEI EEAARMAYAM DFINKMEHGL DTVIGENGIM LSGGQRQRIA IARALLRNCP ILILDEATSA LDTESERAIQ AALDELQKNR TSLVIAHRLS TIEKADEIVV IEDGRIVERG VHAELLVQQG VYAQLNRMQF GQ
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