| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1937 |
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| Symbol | icmF |
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| ID | 5800407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010159 |
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| Strand | - |
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| Start bp | 2007918 |
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| End bp | 2011370 |
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| Gene Length | 3453 bp |
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| Protein Length | 1150 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641339861 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001606411 |
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| Protein GI | 162421893 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.502152 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.887242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTATT TGAATCGATT GTTTTCTGGC TGGGCCATGA AACGCATATT GCTGGTCGGC
TGCTTTATAT TGCTGGCTGC GGCGATATGG TTTCTGGGGC CTTTCCTCGG CTTTGGTGAG
GCGCGGCCTC TCGAAAGTTA TGAAGCCAGA ATTATTTGCA TCCTGCTGGC ACTGCTGCTG
ATCTTAGGTT TTTGGTACGG CGCACCGCGC TTTGTCATTG CCGCCGTCGT TGCCTGTGCT
GCGGTATGGG TGATTGGCCC ATTCATATTA GTTGGTGATG ATCATCCTCT GACTGATGGG
ATCCGTCGCG GCATCATTAT CGCCATCATT GCATTTATTA CACTTATTTA TGGCACCTGG
TGCTTAGTCA AAGCATTGGC GAAAAATCCA GCGTTACTGG ATAACTTCAT TAAGCACAAG
AAAGCGGCCA AGCCTGAAGC GGAGGCTGAA CTTTCTGAAG TTAATGCGAT GATCCGCAAT
GGCATGAACT ATGTGCGCCG TATTCACAGT GGTATTCCGG CCTGGCGACG TTTCTTTATC
TCCAACCGTT GGCGCACAGA ACTGCCTTGG TTCATGGTTG TCGGTATGAA AGGTGCAGGG
AAAACCGCCC TTATCCTCTC TTCAGGACAG GACTTTCCTT TACCTGAGCA GCTGAATCGT
ATTGGCAAAG AAAACCCACC CACTCAACAT TGTGAATGTT TGTTCTCTAA TGACGCCCTG
TTTTTAGACA CTTCAGGGAA ATACATTGAT GACAGCAAAG ATAATCAGAC TGAGTGGACC
GGGATATTAA AGGCACTCAA AAAATATCGT CCGGTTAAGG CAATTAATGG TGTCATTGTT
GCGATTTCGG CATCCGATAT CTTGGGTAAA AGTAAAGCTG ATTTACTGAA TGTGTCGGCG
ACGCTACGCA CGCGTTTGGA TGAGGTACGT GCGGTCTTGG GCGTCCGTTT CCCGGTGTAT
GTCACGATTA CAAAACTGGA TCAAATATCG GGTTTTGATG AATATTTCCG TAATTTAACG
GCTGAAGATC GCGAGCAAAT TTGGGGGGTG ACTTTCCCTT ATAACGAGGC GAAAGAGCAA
TCCGATATGC CACTTCAGCA ACGTATCAGC CATGAGCTGG CACTGCTTGA GGATCGTATC
AGCAATAATA TGCACGTCCG CCAGCAGGAA GAGTATGCCG TGGCGGACAG AAAAGGCATG
TATGCACTCC CTCAGGATTT CAGGATGCTC TCCCAGAGGG TAACGGAAGT TTTACAGAAT
GTTTTCTTCG CCTCACGCTT TGACGAAACA AAATTTCACA CGACCCTGAG AGGGATCTAT
TTTGTCAGCA GTTGTCAGCC TGCGGATGTT GAACTGTTAA ATAACAACAC GCTGATTCAA
AAGTGGCGTA ACGTTATTAA TCATAAAAAA CCGTTATCGC CAGCCGATTT ATCACAAAAA
AGTGATAATG AAGATCGGTT TATTAGCGAT GTGGCTTACG GGAAACAATA TTTCCTCAAG
CAGTTGTTTA GCGATGTGAT TACCAAAGAT GCCGACTTAG TCAGCTATAA CCTGAAAGTA
CAATCCAAAT ACCGTTTTCA GAATCTATTG GGACACGCGG CTTGTATTGG GTTGGCAGTT
TGGCTGGTTT GGGCCTTCTT GGTCAGCTTC CAGCATAACG AGGGGTATTT ACAGGCGACC
GGTGCCAAGC TGAGTCAGTT AGAAAGCACG GTGATGAGTT ATGCCAAAAC GTCCAATGAG
CAGATCTTAC CTGCGTTATT GAACGCGACA CAGCAGTTAC CCGAGTACGG TACGCTGGAT
GTGGCTAACC CTGAGCTTGA CTGGCGTTAT GGCTTATATA CCGGTAGCGC AATCTCACAA
GGTGCGAACA CGCTCTATCA GTTTTTCTTG CAAAAATATC TCTTCCCAAT GGTTGAGAAT
CAGAGTGAGG TTACATTAAG AAAAACGATG CACTCAGGTC AGAGCGAAGA GGTTTATGCC
GCGCTGAAGC TTTATTTGAT GCTGACGGGT GAAGGTAAAT TTGATCGTCA ATATATGATT
GAGCACGTGA CCCAAGATTG GCAGAAAAGT GGAAAAATTG AGCCTTACGA AGAGAAGAGT
ATTTTCGTCG GTCATTTGAA CACGCTGTTT ACCCTGAAAG ACTGGCGGCA GTATGGGCAA
CCGGCAGACA GTGAACTGAT TAAGCAGGCT CGGGCAATAC TGGCGGAAAA AACAGTGACC
GCCAGACTTT GGGGGCGTAT TCAATCCCGC TTATTGGCCG ATGCCCCTGC CAATATGACG
TTACGTAAAA TGGTGGGTGA GCACGCGACA CAGGTATTCA CCCTGTCAGA TGATGAACTA
CTGCATGAAG GGATCCCGGG GCTTTATACC TACGCGGGCT ACCATGAGGT GGTTAAAAAA
AAACTGACAC CTTTGCTGAT GTTACTTCAG GAAGAGGATA GGTGGGTGAT GGCGCAATCG
CTGTCATCTT CTCTTGACCC CCTGACGTTA AGACAAGATG TTCTGGTGAT GTATTTACAA
GGGTATGCCG CTTATTGGAA ACGCTTTCTC TCCAGTGTTC GTCTGATTTC TGTCGATGCG
GACAGTGCAG AGTATGCTCA AGGGCTGTCT CTGGATATTG CTTTGTTAAG GACGTTAGTT
TCAGAAAATT CACCGCTACT CAATTTAGCC AGGCAGGCGG TAAAAGAAAC GACACTCGCC
GAAAAAGAAA AAGCCATTAC TGATGAGATA AACATCAGAA CGCAAGGGCA ATTACTCAGC
CAGGCTAAAA AATTACAAGA AACGATCGCG TTTCGTGAAA ATAAACTGAT TAAAGAGTGG
GTTGATAATC GTTTTGAATC CCTGAGAGTC TTTGTTAATG GGGAACAGAG TGCTGATGTC
ACGGGGGGCA ATAATCTTTC TGTTCTTCAG GGAACGCAGA TGAGCCGAAT AATCGGGACA
TTAAACGATC AATATACCCG TTTTGTTGTT TATAACAGTG CCTTTGAATA TGGCGATATT
CCTCCGTTAT CCCAGGATGG GGAACGTATT GCGGTGGAAT CACAAACATG GCCGGATCCG
TTTAGAAATA TTATTGCACC GTTATTAACG GGCTCATCCC AGAAATTTGA AAATAAAGTG
ATTACTCACA CGTCCAAAGC GATTGATATG GGGGTGGGGG AAATTTGCCG GAATACGCTG
CAAGGGCGTT ACCCATTTGC TGAAAGTGAG CAAATTGTTA GTTTGAATGA TTTTGAGCGT
TTCTTCGGTA CTGACGGTAC GGTGGACAGT TATTTCAAGA AAAACTTGGA GAGTAAAGTC
GACACGTCCT CAATACCTTG GCGTTATAAG GGCAGCGTAA GTAGTGAAGG TTTGGCGTTC
TTTGAACAGG CGGCAATGAT CAGAAACGTG CTATTTAATA CCAATGACGG TAAAAAAATG
GCATTAGATG AGCCTGTCCA TAATTCTGTG TAA
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| Protein sequence | MSYLNRLFSG WAMKRILLVG CFILLAAAIW FLGPFLGFGE ARPLESYEAR IICILLALLL
ILGFWYGAPR FVIAAVVACA AVWVIGPFIL VGDDHPLTDG IRRGIIIAII AFITLIYGTW
CLVKALAKNP ALLDNFIKHK KAAKPEAEAE LSEVNAMIRN GMNYVRRIHS GIPAWRRFFI
SNRWRTELPW FMVVGMKGAG KTALILSSGQ DFPLPEQLNR IGKENPPTQH CECLFSNDAL
FLDTSGKYID DSKDNQTEWT GILKALKKYR PVKAINGVIV AISASDILGK SKADLLNVSA
TLRTRLDEVR AVLGVRFPVY VTITKLDQIS GFDEYFRNLT AEDREQIWGV TFPYNEAKEQ
SDMPLQQRIS HELALLEDRI SNNMHVRQQE EYAVADRKGM YALPQDFRML SQRVTEVLQN
VFFASRFDET KFHTTLRGIY FVSSCQPADV ELLNNNTLIQ KWRNVINHKK PLSPADLSQK
SDNEDRFISD VAYGKQYFLK QLFSDVITKD ADLVSYNLKV QSKYRFQNLL GHAACIGLAV
WLVWAFLVSF QHNEGYLQAT GAKLSQLEST VMSYAKTSNE QILPALLNAT QQLPEYGTLD
VANPELDWRY GLYTGSAISQ GANTLYQFFL QKYLFPMVEN QSEVTLRKTM HSGQSEEVYA
ALKLYLMLTG EGKFDRQYMI EHVTQDWQKS GKIEPYEEKS IFVGHLNTLF TLKDWRQYGQ
PADSELIKQA RAILAEKTVT ARLWGRIQSR LLADAPANMT LRKMVGEHAT QVFTLSDDEL
LHEGIPGLYT YAGYHEVVKK KLTPLLMLLQ EEDRWVMAQS LSSSLDPLTL RQDVLVMYLQ
GYAAYWKRFL SSVRLISVDA DSAEYAQGLS LDIALLRTLV SENSPLLNLA RQAVKETTLA
EKEKAITDEI NIRTQGQLLS QAKKLQETIA FRENKLIKEW VDNRFESLRV FVNGEQSADV
TGGNNLSVLQ GTQMSRIIGT LNDQYTRFVV YNSAFEYGDI PPLSQDGERI AVESQTWPDP
FRNIIAPLLT GSSQKFENKV ITHTSKAIDM GVGEICRNTL QGRYPFAESE QIVSLNDFER
FFGTDGTVDS YFKKNLESKV DTSSIPWRYK GSVSSEGLAF FEQAAMIRNV LFNTNDGKKM
ALDEPVHNSV
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