| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1908 |
|---|
| Symbol | rfaH |
|---|
| ID | 5800379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 1980763 |
|---|
| End bp | 1981251 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641339834 |
|---|
| Product | transcriptional activator RfaH |
|---|
| Protein accession | YP_001606389 |
|---|
| Protein GI | 162421310 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0250] Transcription antiterminator |
|---|
| TIGRFAM ID | [TIGR01955] transcriptional activator RfaH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.00305393 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTT GGTATTTATT GTATTGTAAA CGCGGTCAGA TTTTACGTGC CAAAGAGCAT
TTGGAACGGC AAACTGTAAA CTGTTGGACA CCAATAGTGG CTATCGAAAA GATAGTTCGA
GGGAAACGTA TTGAGGTAAT AGAGGCTCTA TTCCCCAATT ATTTATTCGC TGAGTTTGAC
CCGGAAAATA TCCATACCAC AACCGTCAGC GCCACCCGGG GGGGCAGCCA TTTTGTTCGT
TTTGGTACAC AGCCCGCGGT GATCCCAGCA ACCGTCATTG CTGATATGCA AGCCCATGCT
GTGGATAAGA TAATTGCCCC TGAAGTACCG AAACCTGGTG ATATCGTAAA AATTATTGAT
GGCGTTTTTG CCGGATTACA GGCTATTTAT ACCGAACCAG ATGGTGAAGC CCGCTCGATG
TTGTTACTGA ATATGCTCAA TAGCCAAATT AAGCATAGCC TGGACAATCG TCAGTTCGAA
AAGCAATAA
|
|---|
| Protein sequence | MKSWYLLYCK RGQILRAKEH LERQTVNCWT PIVAIEKIVR GKRIEVIEAL FPNYLFAEFD
PENIHTTTVS ATRGGSHFVR FGTQPAVIPA TVIADMQAHA VDKIIAPEVP KPGDIVKIID
GVFAGLQAIY TEPDGEARSM LLLNMLNSQI KHSLDNRQFE KQ
|
|---|
| |