Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A1754 |
Symbol | |
ID | 5800225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | - |
Start bp | 1816554 |
End bp | 1818200 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641339688 |
Product | putative transporter |
Protein accession | YP_001606243 |
Protein GI | 162419277 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00000362629 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGAACA ACCCGAGAAA AGATATACCG CTGATTGTCA CCAGTTTGCT CTGCATCATT CTGATTGCTT TGGCATTCAG CTTATTTCCG CAGCAAAGCA GCCAAATGGC AGAGACCATT TTTAGTGGCG TTACCCGGCT ACTGGGATCG ACGATCCAAA TATTAGTGCT GCTTGGCTTA ATATTGGTAC TTTATATCGC GGTGAGCAAA TACGGCAATA TTCGTCTGGG TGAGGGAAAG CCTGAGTATC GTACTATCCC ATGGTTGTTT ATGTTTATTT GCGCGGGACT TGGTTCATCA ACCCTGTATT GGGGGGTGAT GGAGTGGGCT TATTACTATC AGACACCGGG TCTGAATATT GCGCCAAAAA CGCCGAAGGC ACTGGAATAC AGCGTCAGTT ACTCCTTCTT TCATTGGGGG ATCAGTGCGT GGGCAACTTA TGCGTTGGCC TCGCTGATTA TGGCTTACCA TTTTCATGTC AGAAAAAACA AAGGGTTAAG TTTATCGGGG ATTATCTCGG CCATTACCGG GGTCAACCCG CAGGGTTTTT GGGGGCGTCT GGTCGATCTG ATCTTTTTAA TCGCGACAAT AGGGGCGCTG ACGATCTCAT TAGTGATCAC CGCCGCCACA TTTACCCGTG GACTGACTGC GCTTATCGGC GTGCCTAATA ACTTTGCGGT GCAGGCTGGC GTGATGTTGG TAGCGGCAGT TATCTTTTCC TTTAGTTCGT ATATCGGTAT TGATCATGGT ATGCAGCGCC TGAGCAAAAT GGTGGGATGG GGCGCTTTTG GTTTTGCCGT TCTGGTGCTT TTAGTGGGGC CAACTGAATT CATTATCAAT AACACCATTA ACTCCATCGG ATTAACCACA CAAAATTTCC TGCAAATGAG CCTGTTCACC GACCCTATGG GGGATGGCCG CTTTACCCGC AGTTGGACGG TCTTTTATTG GTTATGGTGG ATTTCATATA CCCCCGGTGT TGCGATGTTT GTGACGCGGG TTTCACGTGG TCGCAAACTC AAAGAGGTTA TATGGGCTTT GCTGCTGGGC AGTTCGTTGG GTTGCTGGTT CTTCTTTGGG GTACTGGAAA GCTACGCGAT ACAACAGTTT ATTAGTGGTG CGTTAGATGT TCCCCTCATC CTAAATACTC AGGGCGGGGA AACTGCGGTA CAAATGCTGC TCAGCGCGCT ACCCATGGGC AAATTATTCC TTGCTGCCTA TCTGTTCATC ATGATTATTT TCCTGGCTTC ACATATGGAT GCGGTGGCGT ACTGTATGGC GGCAACCAGC ACCCGTAATC TGCGGGAAGG CGAAGATCCT AATCGTATGC TGCGGCTGTT TTGGTGTGTA GTGATTACAC TGATCCCTCT CTCCATTCTG TTTGCTGGTG CCTCGTTGGA TACCATGAAA ACGACGGTTG TACTCACTGC GCTGCCTTTT TTATTGATTC TCTTGATCGA GGTTTATGGC TTTGTCCGCT GGATTAAGCA GGATTATGCC CATGTTCCCG CGCACCTTAT TGAGCAAAGT ACCCCGCAAG TCATGTTGCC GGCTGAATCT TTACCGCCTG CTACTGCGTC AATGTTAGTC GTGGAAACTT TAGTCGTGGA AACTGCGGCG CCACCCGCCA GTAAGCATAA CCAGTAA
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Protein sequence | MLNNPRKDIP LIVTSLLCII LIALAFSLFP QQSSQMAETI FSGVTRLLGS TIQILVLLGL ILVLYIAVSK YGNIRLGEGK PEYRTIPWLF MFICAGLGSS TLYWGVMEWA YYYQTPGLNI APKTPKALEY SVSYSFFHWG ISAWATYALA SLIMAYHFHV RKNKGLSLSG IISAITGVNP QGFWGRLVDL IFLIATIGAL TISLVITAAT FTRGLTALIG VPNNFAVQAG VMLVAAVIFS FSSYIGIDHG MQRLSKMVGW GAFGFAVLVL LVGPTEFIIN NTINSIGLTT QNFLQMSLFT DPMGDGRFTR SWTVFYWLWW ISYTPGVAMF VTRVSRGRKL KEVIWALLLG SSLGCWFFFG VLESYAIQQF ISGALDVPLI LNTQGGETAV QMLLSALPMG KLFLAAYLFI MIIFLASHMD AVAYCMAATS TRNLREGEDP NRMLRLFWCV VITLIPLSIL FAGASLDTMK TTVVLTALPF LLILLIEVYG FVRWIKQDYA HVPAHLIEQS TPQVMLPAES LPPATASMLV VETLVVETAA PPASKHNQ
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