| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1447 |
|---|
| Symbol | |
|---|
| ID | 5799916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 1501734 |
|---|
| End bp | 1502885 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641339403 |
|---|
| Product | beta-lactam binding protein AmpH |
|---|
| Protein accession | YP_001605964 |
|---|
| Protein GI | 162418245 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000414942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.794569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACGTC TCTCTGCCCC GCTGCTGGCT GCTGCTTTGT GGACTATTCC GTTGCACAGC
CATGCCGATA CTCAGCCGTT GACCTCGCAA GATACTAAGC TGTTGACCTC GCAAATTGTT
GACCAATACG CCGAACATAT CTTCTATAAC AGTGGAGCTG TAGGAATGGC TCTGGTGGTT
ATCGATAACA ATCAGGTCGT CAACCGTAGC TTTGGTGAAA CGCAACCCGG CAACAATATT
CGCCCACGGC CAGACTCACT GATCCGCATT GCATCAATAA CCAAGCTAAT GACCAGCGAA
ATCATGGTAA AACTGGCTGA TGATGGCATC GTTAAGTTAA CTGACCCGTT AAAAAAATAT
GCACCGAAAG GGGTCAACGT TCCCTCTTAC AGTGCTAAGC AACCTATTAG GCTGTTGCAT
CTGGCCAGCC ATACCAGCGG CCTCCCCCGT GAGCAACCCG GCGGCCCGCA AAAAAGACCG
GTGTTTACCT GGCCGACCAA AGATAATCGC TGGCAATGGT TGAAACTGGC CAAAGTGACC
GTTCCACCAG GCGTGAAAGC CGCTTACTCT AATTTAGCTT ACGACTTACT GGCTGACGCA
CTGTCACGAG CTGCGGGGAA ACCGTATGCC CACTTATTAC GTGATAAAAT CACCGCACCA
CTGGGGATGA AAAATACCAC CCTGACCCCG ACGGCGGAGC AATGTAAACG CCTGATGATA
GGTGTTGGCA GCAGTCGTTG TGGGAATACA GTTGCAGCAG CAGGTAGTGG CGGCATTTAC
TCGACCCCCG AAGATATGCA GCACTGGATG CAACAATTCT TAGCTTCTGA TAACAGCGCC
CCCAAGCGTT CCGCCAAACG TGAGCAAGCG CTTTACTTCC AGCGCGGTGA CTTGGTGTCA
TTGAAAGGTA TGGATGTCGC CGGTCAAGCT GATGCTCTGG GCTTAGGCTG GGTTTATATG
GCACCTAAAG CTGACTTACC GGGCATTATG CAAAAAACCG GCGGTGGCGG TGGATTTATT
ACTTATATGG CGATGGTCCC AGAAAAAAAC ATTGGCGTTT TTGTGGTGGT CACACGAAGC
CAACTGACTA AATTCAGCAA TATGAGTGAT GGTGTGAATC AATTGGTTGC TGAGTTGGTG
AAAAATCATT GA
|
|---|
| Protein sequence | MKRLSAPLLA AALWTIPLHS HADTQPLTSQ DTKLLTSQIV DQYAEHIFYN SGAVGMALVV
IDNNQVVNRS FGETQPGNNI RPRPDSLIRI ASITKLMTSE IMVKLADDGI VKLTDPLKKY
APKGVNVPSY SAKQPIRLLH LASHTSGLPR EQPGGPQKRP VFTWPTKDNR WQWLKLAKVT
VPPGVKAAYS NLAYDLLADA LSRAAGKPYA HLLRDKITAP LGMKNTTLTP TAEQCKRLMI
GVGSSRCGNT VAAAGSGGIY STPEDMQHWM QQFLASDNSA PKRSAKREQA LYFQRGDLVS
LKGMDVAGQA DALGLGWVYM APKADLPGIM QKTGGGGGFI TYMAMVPEKN IGVFVVVTRS
QLTKFSNMSD GVNQLVAELV KNH
|
|---|
| |