Gene YpAngola_A1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpAngola_A1397 
SymboltolB 
ID5799864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pestis Angola 
KingdomBacteria 
Replicon accessionNC_010159 
Strand
Start bp1455052 
End bp1456344 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content49% 
IMG OID641339355 
Producttranslocation protein TolB 
Protein accessionYP_001605922 
Protein GI162418362 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.87657e-09 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGG CATTTCGAGT AGCGCTAGGC TTTTTAGTTT TATGGGCTTC GGTATTACAT 
GCAGAAGTTC GGATTGAGAT TACCCAAGGG GTAGACTCAG CACGTCCGAT TGGGGTTGTT
CCGTTCAAAT GGATGGGGCC GGGCACACCA CCTGAAGAAA TTGGCGCCAT CGTAGGTGCA
GATTTACGTA ACAGCGGCAA ATTTAACCCA ATTGATGCTG CTCGTATGCC ACAACAGCCT
TCCACAGCCG CTGAAGTAAC CCCTGCTGCT TGGACTGCTT TGGGGATCGA TGCCGTTGTT
GTTGGCCAAG TTCAACCAAG TGCTGACGGT AGCTATGTGG TCTCTTACCA GCTAGTGGAT
ACTTCTGGCT CTGCTGGCAG CATTTTGGCG CAAAATCAGT ATAAAGTGAC TAAACAATGG
TTACGTTATT CAGCGCACAC CGTCAGTGAT GAAGTATTTG AAAAACTCAC TGGGATTAAA
GGCGCTTTCC GTACTCGCAT TGCTTATGTT GTGAAAACTA ACGGTGGTAA ATTCCCACAT
GAATTACGGG TTTCTGATTA CGATGGCTAC AACCAGTTTG TCGTCCACCG CTCTCCTGAA
CCTCTGATGT CACCCGCTTG GTCACCAGAT GGTAGCAAAA TTGCCTATGT GACTTTTGAA
AGTGGCAAAT CAGCATTGGT TATTCAGACG CTGGCAAATG GTGCGATTAG GCAAGTGGCC
TCATTCCCAC GTCATAACGG TGCACCCGCG TTCTCACCTG ATGGCACCAA GCTGGCCTTC
GCGTTATCTA AAAGCGGTAG CCTGAACTTG TATGTTATGG ACTTGGCTTC AGGTCAAATC
AGCCAAGTGA CGGATGGTCG TAGCAATAAT ACTGAACCAA GCTGGTTCCC GGATAGCCAA
AATCTGGCTT ATACCTCGGA TCAGGGGGGG CGTCCACAAG TTTATAAAGT GAATATTAAT
GGCGGTGTGC CACAGCGAAT CACGTGGGAA GGTTCTCAGA ACCAGAACGC AGACGTGAGC
CCTGATGGTA AGTTCCTGGT ATTGGTTAGT TCCAATGGTG GGGCACAACA CATCGCCAAA
CAGGATCTGG AAACGGGAGC CGTTCAAGTA TTAACGGACA CGTTACTGGA TGAAACGCCT
AGTATCGCGC CTAACGGCAC CATGGTTATC TATAGCTCGA CACAAGGGCT GGGTTCCGTG
TTACAGCTGG TCTCGACTGA TGGGCGTTTC AAAGCGCGTC TTCCGGCAAC TGATGGACAG
GTCAAATTTC CTGCCTGGTC GCCGTATCTG TGA
 
Protein sequence
MKQAFRVALG FLVLWASVLH AEVRIEITQG VDSARPIGVV PFKWMGPGTP PEEIGAIVGA 
DLRNSGKFNP IDAARMPQQP STAAEVTPAA WTALGIDAVV VGQVQPSADG SYVVSYQLVD
TSGSAGSILA QNQYKVTKQW LRYSAHTVSD EVFEKLTGIK GAFRTRIAYV VKTNGGKFPH
ELRVSDYDGY NQFVVHRSPE PLMSPAWSPD GSKIAYVTFE SGKSALVIQT LANGAIRQVA
SFPRHNGAPA FSPDGTKLAF ALSKSGSLNL YVMDLASGQI SQVTDGRSNN TEPSWFPDSQ
NLAYTSDQGG RPQVYKVNIN GGVPQRITWE GSQNQNADVS PDGKFLVLVS SNGGAQHIAK
QDLETGAVQV LTDTLLDETP SIAPNGTMVI YSSTQGLGSV LQLVSTDGRF KARLPATDGQ
VKFPAWSPYL