| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0541 |
|---|
| Symbol | dapF |
|---|
| ID | 5799004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 562298 |
|---|
| End bp | 563122 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641338546 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001605134 |
|---|
| Protein GI | 162421020 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTCT CCAAAATGCA CGGTCTTGGC AACGACTTTA TGGTTGTTGA TGCAGTGACT
CAAAATGTTT ACTTTTCGCC GGAATTGATC CGCCGATTAG CAGACCGGCA CACGGGTGTG
GGCTTTGATC AGATGCTGGT AGTTGAGCCG CCCTACGACC CCGAGCTGGA TTTTCACTAC
CGTATTTTTA ATGCCGATGG GAGTGAAGTC TCCCAGTGTG GTAATGGCGC ACGCTGCTTT
GCCCGTTTTG TTCGTTTGAA AGGGCTGACC AATAAGCGCG AGATCAGCGT CAGTACGCAA
ACTGGCCGTA TGATCCTAAG CGTGACAGAA GATGAACAGG TTTGCGTCAA TATGGGCGAG
CCTGATTTTG AACCGCAAAC TGTCCCTTTT CGCGCCGCCA AAGCGGAGAA AACCTATATT
TTACGCGCCG CAGAGCATAC GGTGCTGTGT GGCGTGGTGT CGATGGGCAA CCCCCACTGT
GTGATGCAGG TCGATGATGT TTCGGTTGCC AACGTGGCGT TGCTCGGTCC AGTATTGGAA
AACCACGAGC GTTTCCCTGA GCGGGCAAAT ATCGGCTTTA TGCAGGTCGT CAGTCGCGAC
CACATTCGTT TACGGGTGTA TGAGCGTGGG GCCGGTGAAA CACAAGCCTG TGGCAGTGGT
GCATGTGCTG CGGTGGCCGT CGGGGTGGTG CAAGACTTAT TGAACGAAAA TGTGCATGTC
GAATTGCCGG GCGGCAGTTT ACACATCCGT TGGCAGGGGC CAGGCCATCC GTTGTATATG
ACCGGGCCTG CCACCCATGT CTATGACGGA TTTATTCATT TATGA
|
|---|
| Protein sequence | MQFSKMHGLG NDFMVVDAVT QNVYFSPELI RRLADRHTGV GFDQMLVVEP PYDPELDFHY
RIFNADGSEV SQCGNGARCF ARFVRLKGLT NKREISVSTQ TGRMILSVTE DEQVCVNMGE
PDFEPQTVPF RAAKAEKTYI LRAAEHTVLC GVVSMGNPHC VMQVDDVSVA NVALLGPVLE
NHERFPERAN IGFMQVVSRD HIRLRVYERG AGETQACGSG ACAAVAVGVV QDLLNENVHV
ELPGGSLHIR WQGPGHPLYM TGPATHVYDG FIHL
|
|---|
| |