| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0325 |
|---|
| Symbol | |
|---|
| ID | 5798789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 340646 |
|---|
| End bp | 342067 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641338333 |
|---|
| Product | OprD family outer membrane porin |
|---|
| Protein accession | YP_001604938 |
|---|
| Protein GI | 162419563 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000038295 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.923743 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTACGC ACTGTCAGAT TGCTGCACAC AAGGCTAAAC GTAAAACGTT AGCGCTCGCC
ATCGCGGGTG TATTGTTCGG AACAGGATTT ATGGCGGCCC CAGAGGCCAG AGCTGACGGT
TTTATTGATG ATTCATCCCT GACTGGTGGG ATTTATTATT GGCAGCGACA GCGTGATCGT
AAGGATATGA CGCCAACCAG CCCAGAGTAC GGCAAATATG TCGCTAACCT GCATCACTCC
ACTTTTAACG CTAATTTAGC TTTCTCTTCA GGTTATGTGG CGGACATGTT TGGTCTCGAT
TTAGCGGCAT TTGGCGCGGT TGAAATATCG AACAGCGGCC CGGCAGCACC AAATGAAATT
GGCTTCAGTG ACGCCAAAAC CCGCTGGGAC GAAAAGTGGA CCGGGGATAA GAGTGGCGTC
AGTGTTTATA GAGCCGCAGC CAAATTTAAA TTAGGTGATT TCTGGGCGCG CGGGGGGTAT
ATCCAGCCAA CGGGGCAGAC ACTGTTAGCA CCACACTGGA GCTTTATGCC AGGGACTTAT
CGTGGCGCGG AAGGTGGCGC GAAATTTGAT TTTGATACTG CTGGTGCGTT GTCCATGTCT
TATATGTGGA CCGATGAATA TAAAGCGCCG TGGTACCAAA ATATGTATCA CTTCCGTCAA
GCGGATGGCC TGACTGGTGT CAGTTACCTG CATTCATTTG GTGCTAAATA CGACTTTAAA
AATAATCTGG TGATGGAAGC GGCTTTCGGC CAGGCTAAAG ATTATATGGA CCAGTACTTT
GCTAAAGCGT CCTATGCCTT CCCGGTTGCC GGTAATGATC TGCGCACCAC TTACCAATTC
TATGGCGCAA AAGACAAAGT TGATGGCGGC GCGAGCAATG CTAATGATGT CTATGATGGG
CTAGCCTGGC TACAAGCGCT GACGCTGGGT TACACCACGG GTCCATTTGA CCTGCGTTTG
GAAGGGACCT GGGCTAAAGC TGATGGTAAC CAAGGTTACT TCCTACAACG TATGACCCCA
GGTTATGCCA CATCAAATGG TCGTTTGGAT GTCTGGTGGG ATTCCCGCTC TGACTTCAAC
GCCAACGGTG AAAAAGCACT GTTTGGTGGT GTGATGTATG ACCTGAAAAA TTGGAATATG
GCTGGCTGGT CGGTAGGCAC CTCCTATGCT TATGGTTGGG ATGCGAAGCC AAGCACCAAT
CCAAAATTTG ACCAAAATAC CCGTCTGAAA GAATCAGCAT GGAACTTTGA CATTCTCTAT
ACCCTGCAAG AAGGCCGGGC AAAAGGGACG CTCTTCAAGC TGCACTACAC CCTGTATGAC
AACCACACCA ATATCCCAAG TTATGGCGAT GGGTTCGGTA ACGTCTTCCA AGATGAAAAA
GACGTTAAAT TTATCGTAAT TGCACCATTT ACTCTCTTCT GA
|
|---|
| Protein sequence | MVTHCQIAAH KAKRKTLALA IAGVLFGTGF MAAPEARADG FIDDSSLTGG IYYWQRQRDR
KDMTPTSPEY GKYVANLHHS TFNANLAFSS GYVADMFGLD LAAFGAVEIS NSGPAAPNEI
GFSDAKTRWD EKWTGDKSGV SVYRAAAKFK LGDFWARGGY IQPTGQTLLA PHWSFMPGTY
RGAEGGAKFD FDTAGALSMS YMWTDEYKAP WYQNMYHFRQ ADGLTGVSYL HSFGAKYDFK
NNLVMEAAFG QAKDYMDQYF AKASYAFPVA GNDLRTTYQF YGAKDKVDGG ASNANDVYDG
LAWLQALTLG YTTGPFDLRL EGTWAKADGN QGYFLQRMTP GYATSNGRLD VWWDSRSDFN
ANGEKALFGG VMYDLKNWNM AGWSVGTSYA YGWDAKPSTN PKFDQNTRLK ESAWNFDILY
TLQEGRAKGT LFKLHYTLYD NHTNIPSYGD GFGNVFQDEK DVKFIVIAPF TLF
|
|---|
| |