| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0261 |
|---|
| Symbol | |
|---|
| ID | 5798725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 271720 |
|---|
| End bp | 272595 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641338273 |
|---|
| Product | type II secretion system protein F domain |
|---|
| Protein accession | YP_001604879 |
|---|
| Protein GI | 162418856 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000564215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.000000175169 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTTATT ACGTCGTCGC GTTATCCGGT ATTTTATTAC TGGTGCTGAA TAACCTTAAG
TGGATGAAAA TAAAGCGCTC AATAAGCAAC ACTAAAAAGA GCAAAGCCAA AAGTACGTCT
TCTATTACTA TACTGATAAA AAAAATATTT TTCGAATGGA TTGATTACGT ATCAACCCAC
AGTAAAAGTA CACCTCATAT ATTATTACCA ATATGTTCAT TGGTGATAGT CTATTATATA
AACAGCACTT GGATTAATGT TAATTACTCT TTTGTTTTTA TTATCAACAT CATTTTTATT
ATCGTTTTAC AACTAAAATA TGCTCGTTCA AAACATTATT TATTATTTAA GCAAGATTTC
CCTGAAGTAC TATTAATGAT TAATATGGCA GCAAGCAGCG GTGCCAGTAT CAATCAAGTA
TTGGAACGCT GTGGGAAAGA GATTAGAGGC CCCTTGGGAC AAGAATTAGG GTTGATCTGT
CGGCGATTAA ATCTTGGCGA AACCCCTGAA ACCGTTTTTT ATGATGCGTA TGAGCGGTTC
CATTATCCAG AATTTTATTT CTTAGTGACA ATAATACTGC TTAATATTCA GCAAGGAGGA
CAATTAAAAG AACTGATTAC CCGATTAAGC CAGATAATAA CAAAGAAAAA AACAACCGAA
CAAAAGAAGG CCGTCATGAC GGCTCAAATA AGAATGTCGG TTAATATTAT TTCTATCATG
CCAATGTTAT TTTCTTTTTT ACTTTATCTA CTCGACCCCA CGACGATAGA GTTTGTATGG
CAACATCCCA CAGGTAGATT TATTATCTAT TATATTATTA TCAGTGAGGT TATTGGCATA
TTAATTATCA GAAAAATGCT AGGTAAATCC CTATGA
|
|---|
| Protein sequence | MIYYVVALSG ILLLVLNNLK WMKIKRSISN TKKSKAKSTS SITILIKKIF FEWIDYVSTH
SKSTPHILLP ICSLVIVYYI NSTWINVNYS FVFIINIIFI IVLQLKYARS KHYLLFKQDF
PEVLLMINMA ASSGASINQV LERCGKEIRG PLGQELGLIC RRLNLGETPE TVFYDAYERF
HYPEFYFLVT IILLNIQQGG QLKELITRLS QIITKKKTTE QKKAVMTAQI RMSVNIISIM
PMLFSFLLYL LDPTTIEFVW QHPTGRFIIY YIIISEVIGI LIIRKMLGKS L
|
|---|
| |