| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A0234 |
|---|
| Symbol | fliF |
|---|
| ID | 5798698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 247057 |
|---|
| End bp | 248697 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641338251 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_001604857 |
|---|
| Protein GI | 162418149 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.151863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.235707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAGATA AAATTAAGCA GAAATTGTCA CCTGGTCAAT TAGGTGAAAA TACAAAAACC
ATTCTTATGA GCGCGGTAGC CCTTTTGGTT ACCGCCGCGA TTATTTTCAG TCTCTGGCGT
AGCTCACAGG GCTACACGGC ATTGTTTGGC TCGCAGGAGA ATATCCCGAT CACCCAAGTG
GTGGAAGTGC TGGAAGGAGA GGCCATTGCC TATCGCATAA ACCCGGATAA TGGTCAGGTG
TTAGTGGCTG AAAATCAGTT GGGTAAAGCG CGTATCTTGC TGGCAGCAAA AGGAATTACT
GCCACTCTCC CCATTGGCTA TGAATTGATG GATAAAGAAA GCATGCTTGG CAGCAGCCAG
TTTATCCAAA ATGTTCGTTA TAAGCGCAGC CTGGAAGGGG AATTGGCGCA GAGCATGATG
GCATTGAGCG CGGTGGAATA TGCCAGAGTC CATCTGGGCA TGAGTGAAGC CAGTTCATTC
GCCATCAGTA ATCATGCAGA TAACAGTGCC TCGGTGGTGT TACGGCTGAG ATACGGCCAA
ACATTGAGCA CTGAACAGGT GGGGGCCATT GTCCAATTGG TGGCGGGCAG TATTCCCGGA
ATGAAACCTG CCAATGTGCG GGTGGTCGAT CAACACGGTG AATTATTGTC ACAAGCTTAT
CAAGCGAACA GTGAGGGGGT GCCCAGTGTG AAAAGTGGGA CCGAATTAGC TCACTATTTG
CAAAGCACCA CTGAGAAGAA TATCGCGAAC CTGTTGAATT CGGTGATTGG CGCGAATAAC
TACCGCATCA GTGTCTCTAC CCAGTTGGAT ATGAGCCGTA TTGAAGAGAC GGCGGAGCAC
TATGGCCCGG ACCCTCGAAT CAATGATGAA AATATCCAGC AGGAGAACAG CAACGACGAT
ATGGCGATGG GGATCCCCGG ATCACTAAGC AATCAGCCCA TCCCTCAATC TCAGGCGGGT
CAAACGCCAG CCGCCGTCAG CCGCAGCCAG GCGCAGCGTA AATATATTTA TGATCGCAAT
ATCCGCCATG TGCGTTATCC GGGTTACAAG CTGGAGAAAA TGACCGTTGC GGTGGTGCTG
AATAAATCGC TCCCGGTGTT GGAACAGTGG ACGCCAGAAC AGCAGGAAGA ACTCAAACGT
TTAATTGAAG ATGCCGCAGG TATTGATGTT AAACGTGGGG ATTCTCTGAC CATTAACATG
ATGGCCTTCG CGGTCCCTAC GTTGATTGAC GAGCCGGTGA TGCCGTGGTG GCAAGAGCCA
AGTACCTTCC GTTGGGCAGA ATTGCTGGGG ATCGGGCTGC TGTCATTACT GGTGCTGTGG
TTTGGTGTTC GCCCATTGAT GAAACGCTAT TCGCGTAAGG GTTCGGAGAA CCTGCCGTTA
GCCATTTCCT CGGCGAGTGC AGATGAGGCG CTTGATCATG TGGATACCGG TGTAGACGGT
GCAGAAAGTA GCCCGCGTAC AGAAAATGCC TTCTCCGCAT CTTCTCTTTG GAAAAGCGAC
GATCTACCAG AGCAAGGCTC CGGTTTAGAA ACCAAAATCG CCCATCTGCA ACAATTGGCG
CAGTCAGAAA CTGAACGTAC CGCCGAAGTC ATTAAACAAT GGATTAACAG TAATGAACGA
ATCAAATCTC AACCTGAATG A
|
|---|
| Protein sequence | MLDKIKQKLS PGQLGENTKT ILMSAVALLV TAAIIFSLWR SSQGYTALFG SQENIPITQV
VEVLEGEAIA YRINPDNGQV LVAENQLGKA RILLAAKGIT ATLPIGYELM DKESMLGSSQ
FIQNVRYKRS LEGELAQSMM ALSAVEYARV HLGMSEASSF AISNHADNSA SVVLRLRYGQ
TLSTEQVGAI VQLVAGSIPG MKPANVRVVD QHGELLSQAY QANSEGVPSV KSGTELAHYL
QSTTEKNIAN LLNSVIGANN YRISVSTQLD MSRIEETAEH YGPDPRINDE NIQQENSNDD
MAMGIPGSLS NQPIPQSQAG QTPAAVSRSQ AQRKYIYDRN IRHVRYPGYK LEKMTVAVVL
NKSLPVLEQW TPEQQEELKR LIEDAAGIDV KRGDSLTINM MAFAVPTLID EPVMPWWQEP
STFRWAELLG IGLLSLLVLW FGVRPLMKRY SRKGSENLPL AISSASADEA LDHVDTGVDG
AESSPRTENA FSASSLWKSD DLPEQGSGLE TKIAHLQQLA QSETERTAEV IKQWINSNER
IKSQPE
|
|---|
| |