| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | COXBURSA331_A2135 |
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| Symbol | ligD |
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| ID | 5793783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Coxiella burnetii RSA 331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010117 |
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| Strand | + |
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| Start bp | 1943281 |
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| End bp | 1945728 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641331463 |
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| Product | DNA ligase D |
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| Protein accession | YP_001597749 |
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| Protein GI | 161829752 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTCTGT TGAGCCTGAA ACATTATCGC CAAAAACGAG ATTTTACCAA AACCTCCGAA
CCTCAGGGGG AAAGTGCTTC CTCTAGTCAA CAGTTCATTT ACGTGATTCA AAAACACGAT
GCTTCACATT TGCATTACGA CCTTCGCTTA GAATTAGACG GTGTACTGAA AAGCTGGGCG
GTTCCTAAAG GGCCTTCCTT AAATTCTGAT CTAAAACGAT TAGCTGTCGA AGTGGAGGAC
CATCCCATCG ATTACGCCAC TTTTGAAGGT AATATCCCTA AAGGACAATA TGGTGCGGGT
CCGGTTATTG TTTGGGATAA AGGTACCTGG CAGCCCGAAG GGAATGCAAA AGAGAATTTA
AAAAAAGGAA AGCTCGTCTT TATTATTAAT GGTGAAAAAT TAAAGGGAAA ATGGGCGCTA
GTAAGGCTTA AAACCGACGA TTATAAGAAT AATTGGCTAT TAATTAAAAA AAAAGATCAT
TATGCCACCG AACGTTTTGA TATCGATAAT TATCCATTAA GCGTAATCAG TGGCGCTTCC
ATAGAAGAAA TTAAAAATCA CAAACTTGCC CTATCGCTAA GCGACTTAAA AAATGCAAAA
AAAACAGTAG TTCCTGAATT TATCCAACCG CAACTCGCTA AATTAAAGAC AGTTGTGCCC
GATTCACCGG ATTGGATTCA CGAGATTAAA TTTGATGGCT ATCGAATCAT TTGTATTATT
AAAAAAGGAA TTATTCAATT AATGACACGA AATCAAAAAA ACTGGACTGA AAAATTAGCC
GGGCTTGCAG AAACGATGAA ATCAATACCT ATCGATGAGT CAATACTGGA TGGAGAAATA
GTTGTTTTCG ATGAATCGGG GAAAACAGAT TTCCAGCTTC TGCAAAATGC CATCAAAGCC
AAGAAATACA ATGAAATAAA ATATTATCTC TTTGATATTC CTTTTTGCCA GAAATTTGAT
CTTAGCCAAG TGCCATTGAT AATGAGAAAA CGATTATTAA AAAAGTTAAT TTTACAATGG
AAAGAAAAAA GTGGAAGCAT ACTTTATTCC AGTCATATAA AAGGAAATGG AAAAGCTATT
CTAGAACGTG CTTGCGAGTT GGGTTTGGAA GGAATTATTT CCAAAAAAAT CGATGCTGCT
TATGAGCAAC GAAGAAGCTC TAGTTGGATA AAGCTCAAGT GTAAACGACA GCAAGAATTC
GTGATTGGTG GCTATACAAA ACCGCGGGGA GAACAACTCT ATTTTGGCGC TTTATTATTA
GGCTATTATC AAAATAAAAA ATTAATTTAT TGTGGGAGGG TTGGCACTGG GTTTAGCAGT
CTATCGTTAA AAGATATTTA TGAAAAATTA ATAAATCGCG AACAAAAAGC CCCCGCCTTT
TCTGAGTTAC CTACTTTTGG AATAAAAGCA GGCAATCATT GGGTAAAACC CGAATTAGTG
GCTGAGATTG AATTCGCTGA GTGGACGAAA GATAAACGTT TGAGGCAGCC GGTTTTTAAA
GGGTTGCGTG AAGACAAGGA AGCTAAAGGA GTTAAATTAG AAACAGTTAA AAAAACGACA
GTCAAAAATA AGCCTAATAA TATTAAATTA ACCAACCCTG AAAAAATTCT ATACCCCGAA
GAAAAAATCA CGAAACGCCA GTTGGCGGAT TTTTATAGCA AAATAGCCGA TCGCTTACTG
CCTCACATCG TTCACCGCCC GTTGATGCTG CTTCGTTGTT CGAATGGCTA TAACAAAGAA
TGTTTTTTTC AAAAACATCC TGATCAAAAT GGCGAGGAAT TTGTTTATAG CGTTGAAATA
GAAGAAAAAG AAAGAAAAAG GTATCTGACG ATTCATGATG AAAAAGGCCT TCTTGCATTA
GTTCAAATGG GCGTCTTGGA AATTCACCCG TGGGGCAGCA GCGATTCGCA TCCGGAAAAA
CCAGACCGAT TAATTTTTGA TATTGATCCG CATCCGGCGG TCAGTTGGAA AGCCGTGATT
AATTGCGCGA CTGATGTTTT TGAAGTATTG AAGGCTTTGG GTTTGCGAAG TTTTGTTAAG
ACTTCTGGAG GAAAAGGGTT GCACGTGTAC GTTCCTATTC AGCCGCAATT GGGTTGGGAG
AAACTGCATG AATTCGCGCA GAAGTTGGCT AAATTAATTG TTCAGGTTAA TCCACGTCTT
TATACAGCTG AATTGAGTAA AGGAAAACGG CTCAATAAAA TATTTATCGA TTATATTCGA
AATAACCGAG GCGCCACTTG TGTGGCGCCT TATAGCACCC GAGCAAAAAA GCATGTCCCT
CTTTCCACCC CGGTTTCCTG GGATGAATTG TCAGCGGTAA AATCCCCTAC CCAATTTACG
ATAAAAAATA TATTCCATCG CCTGGAGGCA TTAAACCAAG ACCCTTGGGA GGAGTTTTTC
GACATAAAAC AATCAATCAC TGCCTCGATG TGGAAATTTT TTAGTTAA
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| Protein sequence | MILLSLKHYR QKRDFTKTSE PQGESASSSQ QFIYVIQKHD ASHLHYDLRL ELDGVLKSWA
VPKGPSLNSD LKRLAVEVED HPIDYATFEG NIPKGQYGAG PVIVWDKGTW QPEGNAKENL
KKGKLVFIIN GEKLKGKWAL VRLKTDDYKN NWLLIKKKDH YATERFDIDN YPLSVISGAS
IEEIKNHKLA LSLSDLKNAK KTVVPEFIQP QLAKLKTVVP DSPDWIHEIK FDGYRIICII
KKGIIQLMTR NQKNWTEKLA GLAETMKSIP IDESILDGEI VVFDESGKTD FQLLQNAIKA
KKYNEIKYYL FDIPFCQKFD LSQVPLIMRK RLLKKLILQW KEKSGSILYS SHIKGNGKAI
LERACELGLE GIISKKIDAA YEQRRSSSWI KLKCKRQQEF VIGGYTKPRG EQLYFGALLL
GYYQNKKLIY CGRVGTGFSS LSLKDIYEKL INREQKAPAF SELPTFGIKA GNHWVKPELV
AEIEFAEWTK DKRLRQPVFK GLREDKEAKG VKLETVKKTT VKNKPNNIKL TNPEKILYPE
EKITKRQLAD FYSKIADRLL PHIVHRPLML LRCSNGYNKE CFFQKHPDQN GEEFVYSVEI
EEKERKRYLT IHDEKGLLAL VQMGVLEIHP WGSSDSHPEK PDRLIFDIDP HPAVSWKAVI
NCATDVFEVL KALGLRSFVK TSGGKGLHVY VPIQPQLGWE KLHEFAQKLA KLIVQVNPRL
YTAELSKGKR LNKIFIDYIR NNRGATCVAP YSTRAKKHVP LSTPVSWDEL SAVKSPTQFT
IKNIFHRLEA LNQDPWEEFF DIKQSITASM WKFFS
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