| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | COXBURSA331_A0328 |
|---|
| Symbol | rpoB |
|---|
| ID | 5794638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Coxiella burnetii RSA 331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010117 |
|---|
| Strand | + |
|---|
| Start bp | 285230 |
|---|
| End bp | 289357 |
|---|
| Gene Length | 4128 bp |
|---|
| Protein Length | 1375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641329855 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001596175 |
|---|
| Protein GI | 161831303 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.853361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAG CGAATAGTAG AAGTAGGAAT TCAGCTACGA TTTCTTATCC TGAGAAAAGA
CGCGCGCGCG TCAATTTAGG GAAACGCGAA GTCGAAATAT TAAAAACGCC TTATTTATTA
GAAACACAGA TAGAATCTTA TCGAAAATTT TTGCAAAAAG ATATCGCCGC AGAAAAACGC
GAAGATAACG GTTTGCACGC TGCCTTTAAA TCTGTTTTCC CTATTACCAG CTATTCTGGG
TACGCAGTGC TTGAATACGT AGGTTACAGT TTGGGGGGAG AATCCACCCT TTTCGATGTT
GAGGAATGTA AATTACGGGG ATTGACCTAC GCGGCTCCTT TGAAAGTTAA TATGAGGCTG
GTCATTTACG ATAAAGAAGC CCCTGCCGGT AAAAAAGCCA TCAAAGATAT TAAAGAGCAA
GAAGTTTACA TGGGCGAAAT TCCATTGATG ACAGAGACGG GCAGTCTTGT CATTAACGGG
ACTGAGCGCG TAGTGGTTTC ACAGCTCCAT CGTTCCCCCG GCGTCTTTTT TGAACATGAC
AAAGGAAAAA CGCATTCCTC AGGAAAATTA TTATATTCTG CCCGCGTCAT TCCTTATCGT
GGTTCGTGGT TGGATTTTGA ATTTGATCCT AAAGATTGTT TATTTGTGCG TATTGATCGT
CGGCGAAAGT TGCCGGCTAC GGTTATTTTG CGCGCGCTTG GTTATGATAC CGAGCAAATC
CTCGATATGT TTTATAAAAC CAATCACTTT CATCTTAACC AAGAAACCGT CACCTTAGAT
TTGATTCCGC AGCGGTTACG AGGCGAGCTG GCGGTTGTCG AAATCAAAGA TAAAAAAGGT
AAAGTTATCG TTGAAGCCAA TCGTCGAATT TCAGCGCGGC ACATTCGCCT CATCGAAAAA
GCAGAAATTA ATAAACTTGA ACTGCCCGAC GATTATTTAT ATGGCAAAGT CATTGGGAAA
ACCATTATTG ACAAAGAAAC TGGCGAAATC ATCGCGCACG CGAATGAAGA AATTACCGCT
GAATTATTAA AAAACTTACG CGCTACGAAA ACGGCGTCGC TGGATACCTT GTATATCAAC
GAAATCGAAT GCGGTCCGTA CGTTTCTGAT ACTTTGCGGT TAGATACCAC GACCAACCAA
CTTGAAGCAC TCGTGGAAAT TTATCGCATT ATGCGCCCGG GCGAACCACC CACAAAAGAA
GCGGCAGAAA GTTTGTTTGA AAATTTATTC TTCTCGCCGG AGCGTTATAG CTTATCGGCA
GTGGGACGGA TGAAATTTAA TCGCCGTGTA GGGCGTAAAG AATTAACCGG ATTGGATGTT
TTATCCAAAG AAGACATTGT TGATGTATTG CGCGTATTGG TCGATATTCG TGATGGTAAA
GGGGATGTCG ATGATATCGA TCATCTGGGA AATCGACGTA TCCGAAGTGT GGGTGAAATG
GCGGAAAATC AATTCCGCGT GGGTCTTGTG CGGGTGGAGC GCGCCGTTAA AGACAGACTC
AGTTTGGCCG ACGTCGAAAA CCTCATGCCT CAGGATTTAG TAAACGCTAA ACCTGTTTCT
GCAGCCATTA AAGAATTTTT TGGTTCAAGC CAACTATCGC AATTTATGGA TCAAAATAAT
CCGCTCTCAG AAATCACTCA TAAACGACGC GTATCCGCCT TGGGACCGGG AGGATTAACG
CGAGAACGTG CGGGGTTTGA AGTACGTGAC GTGCACGTGA CACACTATGG CCGAGTTTGT
CCCATTGAAA CGCCCGAAGG TCCTAATATC GGGTTAATTA ACTCTTTAGC TGTTTTTGCT
CGGGCTAATG AATATGGATT TTTAGAAACG CCTTATCGTA AAGTCGTTGA TCGTGTAGTG
ACTGATGAAA CGGAGTATTT GTCAGCTATT GAAGAAGGTG ATTATTACAT TGCGCAAGCC
AATACCAATG TCGATGGAAA AGGGCGGCTA GTCGATGATT TAATTTCCTG TCGGTATAAA
GGAGAGTTTA CTTTAACGAC ACCCGATAAG ATTAATTATA TGGATGTGTC GCCGCGACAA
ATCGTTTCCG TTGCTGCTGC GTTAATTCCT TTTTTGGAAC ACGATGACGC TAACCGTGCA
TTGATGGGAT CAAACATGCA ACGCCAAGCC GTGCCCACCA TTCGGCCGGA AACCCCATTA
GTGGGAACCG GTATGGAGCG TACCGTAGCA GTGGACTCAG GGGTAACGGT CATTGCTAAG
CGCAGTGGTG TCATCGACTC CGTTGACGCT TCGCGAATCG TTGTTCGCGT AGACCGAAAA
GAAACGGAAG ACGATGATGA CATCGGTGTG GATATCTATA ACCTAACGAA ATTTACTCGC
TCTAATCAGA ATACCTGCAT TAATCAGCAT CCCATTGTTG AAGTCGGCGA TAAAGTCCAA
AAAGGAGACG TATTAGCGGA TGGCCCCTCC ACCGATATCG GTGAGTTAGC GCTGGGGCAA
AACTTATTAG TCGCTTTTAT GCCGTGGAAC GGATATAACT TCGAAGATTC CATTTTGATT
TCTGAGCGAT TGGTGGAAGA AGATCGTTTT ACCACCATCC ATATTCAGGA ATTTACCTGT
GTGGCTCGCG ATACTAAATT AGGGCCGGAA GAAATCACTT CGGATATTCC CAACGTCGGT
GAAAGTGCGT TGGCGAAATT GGATGAGTCC GGCATTGTCC ACATCGGTGC TGAAGTTAAT
GCCGGCGATA TTTTAGTCGG TAAAGTCACT CCTAAAGGAG AAACGCAACT TACACCGGAA
GAAAAATTAT TGCGCGCCAT TTTCGGTGAA AAAGCTTCAG ATGTAAAAGA TACTTCGTTA
CGCGTAACGC CGGGGATTAC CGGAACTGTC ATTGACGTTC GTATCTTTAC TCGGGAAGGC
ATTAAGAAAG ACGAGCGGAC GTTAGAAATA GAAAAAGCCG AATTGTCGAA AGTTGAAAAA
GATCTCAATG ACGAGCTGCG GGTTCGGGAA GACGCGCTGT TTGAAAATTT AGAAAAATTG
CTGACGGGAC GCGTTGCTGC GGGTGGCCCG AATAAACTCG CTAAGGGAAC GAAAATTACA
AAAAGTTACT TAGCGGATTT ACCCCGACAG AAATGGTTTG AAATTCGTTT GCAAGACGAT
GCTGCCACCA AGCGGCTCGA AGCTTCTCAC GAGCATTTTA AAGAATTGCG TGAAACGCGA
GATGCTAAAT TAAAAGACTC ACGACAAAAA TTAACGCAAG GCGGTGATTT AGCGCCGGGC
GTCATTAAAA TTGTGAAAGT TTATCTTGCT GTAAAACGAC GCATTCAACC CGGTGATAAA
ATGGCAGGGC GTCACGGTAA TAAAGGCGTC ATTTCCACCA TCGTCCCTAT CGAAGACATG
CCCTATTTAG AAGATGGAAC GCCGGTGGAT ATCGTTCTTA ATCCTTTAGG CGTACCGTCG
CGGATGAACA TCGGTCAAGT GCTGGAAACT CATCTGGGTT GGGCCGCGAA GGGATTAGGC
AAAAAAATTG GTGAAATGAT TGAAAAAGGT GCGGACGCCA AAGAGCTGCG CAATTCATTG
AAACCCATTT ATGATTTGAG TAAGACCCAG CGCTTTGATT TAGAGGCATT AGAGGACCCT
GAAATTGTGA CGTTGGCGAA AAACTTGCGA AAAGGTGTGC CCATTTCCTC GCCTGTATTC
GATGGAGCGA CCGAGGAAGA AATTAAGCAG CTGCTGAAAA TGGCAGATCT TCCCACGTCC
GGCCAAGCCG CATTGTACGA TGGTCGAACC GGCAAAAAAT TCGATCGGTC GGTTACCGTC
GGTTACATGT ACATGCTGAA GCTTAACCAT CTAGTCGATG ATAAGATGCA CGCGCGCTCC
ACAGGATCGT ACAGTTTAGT GACGCAGCAA CCCCTCGGTG GGAAGGCTCA ATTTGGCGGT
CAACGGTTCG GTGAAATGGA AGTGTGGGCC TTGGAAGCCT ACGGAGCGGC TTATACGTTG
CAGGAAATGT TGACGGTTAA ATCCGACGAC GTAGCTGGCC GCACGCGCAT GTACAAAAAC
ATCGTCGACG GCGATCATCG AATGGATGCA GGTATGCCGG AGTCATTTAA CGTATTAGTA
AAAGAAATCC GTTCGTTGGC GATTGATATT GGTTTGGAGA ATGATTGA
|
|---|
| Protein sequence | MAQANSRSRN SATISYPEKR RARVNLGKRE VEILKTPYLL ETQIESYRKF LQKDIAAEKR
EDNGLHAAFK SVFPITSYSG YAVLEYVGYS LGGESTLFDV EECKLRGLTY AAPLKVNMRL
VIYDKEAPAG KKAIKDIKEQ EVYMGEIPLM TETGSLVING TERVVVSQLH RSPGVFFEHD
KGKTHSSGKL LYSARVIPYR GSWLDFEFDP KDCLFVRIDR RRKLPATVIL RALGYDTEQI
LDMFYKTNHF HLNQETVTLD LIPQRLRGEL AVVEIKDKKG KVIVEANRRI SARHIRLIEK
AEINKLELPD DYLYGKVIGK TIIDKETGEI IAHANEEITA ELLKNLRATK TASLDTLYIN
EIECGPYVSD TLRLDTTTNQ LEALVEIYRI MRPGEPPTKE AAESLFENLF FSPERYSLSA
VGRMKFNRRV GRKELTGLDV LSKEDIVDVL RVLVDIRDGK GDVDDIDHLG NRRIRSVGEM
AENQFRVGLV RVERAVKDRL SLADVENLMP QDLVNAKPVS AAIKEFFGSS QLSQFMDQNN
PLSEITHKRR VSALGPGGLT RERAGFEVRD VHVTHYGRVC PIETPEGPNI GLINSLAVFA
RANEYGFLET PYRKVVDRVV TDETEYLSAI EEGDYYIAQA NTNVDGKGRL VDDLISCRYK
GEFTLTTPDK INYMDVSPRQ IVSVAAALIP FLEHDDANRA LMGSNMQRQA VPTIRPETPL
VGTGMERTVA VDSGVTVIAK RSGVIDSVDA SRIVVRVDRK ETEDDDDIGV DIYNLTKFTR
SNQNTCINQH PIVEVGDKVQ KGDVLADGPS TDIGELALGQ NLLVAFMPWN GYNFEDSILI
SERLVEEDRF TTIHIQEFTC VARDTKLGPE EITSDIPNVG ESALAKLDES GIVHIGAEVN
AGDILVGKVT PKGETQLTPE EKLLRAIFGE KASDVKDTSL RVTPGITGTV IDVRIFTREG
IKKDERTLEI EKAELSKVEK DLNDELRVRE DALFENLEKL LTGRVAAGGP NKLAKGTKIT
KSYLADLPRQ KWFEIRLQDD AATKRLEASH EHFKELRETR DAKLKDSRQK LTQGGDLAPG
VIKIVKVYLA VKRRIQPGDK MAGRHGNKGV ISTIVPIEDM PYLEDGTPVD IVLNPLGVPS
RMNIGQVLET HLGWAAKGLG KKIGEMIEKG ADAKELRNSL KPIYDLSKTQ RFDLEALEDP
EIVTLAKNLR KGVPISSPVF DGATEEEIKQ LLKMADLPTS GQAALYDGRT GKKFDRSVTV
GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL
QEMLTVKSDD VAGRTRMYKN IVDGDHRMDA GMPESFNVLV KEIRSLAIDI GLEND
|
|---|
| |