| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1731 |
|---|
| Symbol | |
|---|
| ID | 5773527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1587692 |
|---|
| End bp | 1588837 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641317385 |
|---|
| Product | Serine--pyruvate transaminase |
|---|
| Protein accession | YP_001583065 |
|---|
| Protein GI | 161529239 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.186952 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATATC TTTCAATGCT TCCAGGACCA ACAAACGTAC CTAATCGCGT TATGAGAGCA
ATGTTAGCAC CAATCATCAA CCACAGAAGT GATGATTTTG TTGAATTATA CACTGATGTA
GTTGACAAAA CTCAACAAGT CTTTGAAACT AAAAATGATA TTGTAGCATT GTCCGCATCT
GGAACTGGTG CAGTTGAAGC CGGTGTTGTT AATTTAGTTA AGAAAGGCGA TAAAGTAATC
ATTCCAGTAA ACGGTGAATT TAGTAATAGA CTATCTCAAT TAATTGAAGG TCAAGGAGCA
AACGTTGTAA AACTTGAAAC TCCTCCAGGA CAAAATGCAA CTTTTGATCA AGTAAAAGAA
GCATTTGACA ATAACAAAGA TGTTAAGGCA TTCTATGTTG TTCATAATGA AACTTCAACA
GGAACAATGG TAAACTATCT TGATAGAATA TCTGACTTAA CCTCAAGAAA TGATGCTTTC
TATGTAGTAG ACTCTGTATC ACTCTTAGGA GGAGCGCCAC TTCCAGTTGA TAAATGGGGT
GTTGATGTAT GTATGACTGG AGCACAAAAA GCAATTGCAG CTCCTCCAGG AATTTCTCCA
ATCTCTGTTA GTCCAAGAGC TAAAAAATAC ATGCAAGAAA ACCCACCAAA TACAATGTAT
TTCAATCTAG CAAGATACTT CAAATATTAT GATGAGGAAA AACACACTCC TTTCACACCA
GCATTACCTT TACTTTATGC ATACAGAGAA GCATTAGCAA TTTTACTTGA AGAAGGACTA
CAAAATGTAT TCACCAGACA CAAAGTTTGT TCAGATGCAT TATACTCTGG ACTTAGTGCT
ATGGGATTAT CTCCATTTGC AAAAGAAGAA GATCGTTCAA TCTCTATTGT TGCACTAAAC
TATCTTGATG GTCTTGAAGA CAAGATATTT AGAAATACAC TTGCAAACAA ATTCAAAGTT
CTTGTTGCAG GCGGATTTGG AAATCTCAAA GGTAAAGTGT TTAGAGTTGG ATGTATGGGT
GAAGTTAGTC CATATCATGT AATGAGAACA ATCTCTGCAA TTTCATCAAC ATTAGCAATG
ATGGGATATG AAGTAGATGC TCAAGCAGGA CTAAAGACTG CTGAAGAAAA ACTAAAGTCT
CTCTAA
|
|---|
| Protein sequence | MEYLSMLPGP TNVPNRVMRA MLAPIINHRS DDFVELYTDV VDKTQQVFET KNDIVALSAS
GTGAVEAGVV NLVKKGDKVI IPVNGEFSNR LSQLIEGQGA NVVKLETPPG QNATFDQVKE
AFDNNKDVKA FYVVHNETST GTMVNYLDRI SDLTSRNDAF YVVDSVSLLG GAPLPVDKWG
VDVCMTGAQK AIAAPPGISP ISVSPRAKKY MQENPPNTMY FNLARYFKYY DEEKHTPFTP
ALPLLYAYRE ALAILLEEGL QNVFTRHKVC SDALYSGLSA MGLSPFAKEE DRSISIVALN
YLDGLEDKIF RNTLANKFKV LVAGGFGNLK GKVFRVGCMG EVSPYHVMRT ISAISSTLAM
MGYEVDAQAG LKTAEEKLKS L
|
|---|
| |