Gene Nmar_1725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_1725 
Symbol 
ID5774755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp1581822 
End bp1582835 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content34% 
IMG OID641317379 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionYP_001583059 
Protein GI161529233 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0282763 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGAAG AAAAAGAGAA GAAAAAAGTT GTTGCATTAT TGTCTGGAGG TCTAGACAGT 
CAGCTTGCTG TTAGAATGAT GCAAGAGCAA GGATTTGATG TCTCTGCAGT TGCAATAAAG
ACTCCATTTT GTGATTTTGA TTGTGGAAGA GGTTGTGGAT TTGAAATTAG AGAGAGAGCA
GATGATCTTA ATGTAAATTT GAAGACAGTA TATCTTGGTG ATGAATATAT CGAGATGCTA
AAAAATCCAA AACACGGAAT CGGTGCTGGA TTTAATCCAT GTATTGATTG CAGAGCTATG
ATGTTTGATG CTGCAAAAAA ACACATGGAA GAGATCGGAG CAGAATTTAT TGTATCAGGA
GAAGTGTTAG GGCAACGCCC AATGAGTCAA CATAGACCTG CATTAAGAAC TATTGAAAAA
GAATCAGATC TTGTAGGAAA AATTGTTAGA CCATTATCTG CTGCATTGTT ACCAGAAACA
ATTCCTGAAA AAGAAGGATT GATCAAAAGA GAAAATCTTG GAATGATAAG AGGTAGAACA
AGAAGGAACC AATTAGACAT GGCAAAACAA TATGGAATTG AAAACCCTCC CAATGCAGGA
GGAGGTTGTT TGTTAACAGA ACCACAATTT GGAATTAAAG CTAAAGATCT TTTTAATCAT
GTTGAAAATC CAACAATCAA CGATATTGAT TTGTTAAAAA TTGGAAGGCA TTTCAGATTA
GACGAAGAAA CAAAATTTGT TGTTGGTAGA AACAAAGATG AAAATGAAAT GATCAAAGCA
ATAGCATTAC CAAATGATAT TTTACTTGAA GCAAAAGATC ATGTTGGACC AACATCAATT
CTAAGAGGTA AAAATGCAAA AGATCATACA AAATTTGCAG CAGCTGTAAC TCTAAGATAT
TCAGATGCTC CAAAAAACCA ATCAGAAATT GTTTTGGTAA AAAATGGAGA CGATAGTGAA
GAAATTAGTG CTAAAAGCAT AGAAGAAGAA GATTACATAA AATTTAGAAT TTAG
 
Protein sequence
MTEEKEKKKV VALLSGGLDS QLAVRMMQEQ GFDVSAVAIK TPFCDFDCGR GCGFEIRERA 
DDLNVNLKTV YLGDEYIEML KNPKHGIGAG FNPCIDCRAM MFDAAKKHME EIGAEFIVSG
EVLGQRPMSQ HRPALRTIEK ESDLVGKIVR PLSAALLPET IPEKEGLIKR ENLGMIRGRT
RRNQLDMAKQ YGIENPPNAG GGCLLTEPQF GIKAKDLFNH VENPTINDID LLKIGRHFRL
DEETKFVVGR NKDENEMIKA IALPNDILLE AKDHVGPTSI LRGKNAKDHT KFAAAVTLRY
SDAPKNQSEI VLVKNGDDSE EISAKSIEEE DYIKFRI