Gene Nmar_1527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_1527 
Symbol 
ID5773680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp1389055 
End bp1391223 
Gene Length2169 bp 
Protein Length722 aa 
Translation table11 
GC content39% 
IMG OID641317178 
Productthrombospondin type 3 repeat-containing protein 
Protein accessionYP_001582861 
Protein GI161529035 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value4.97915e-10 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAACAAT ATCTTTTAGG ATTTTTAATT TTACTTACCA TAACTATTGG AATGACACCA 
AACAGTGTTT TTGCAAATAC TACAATTGAC ACTGATGGTG ATGGTGTTCC AAATGCTGTT
GATCAATGTC CTCATCTCTT AGAGGACTAT GATCCTGAAT ACGGTAACAA CATTGACGGT
TGTCCTGCAG ACTTTGTTCC ATGGTATGAT GCTGATTATG ATGGTATTCA AGATCATGTT
GATAACTGTC CAACCGTAAA AGAAACCTAC AATCGTTTCC AAGACACTGA CGGTTGTCCT
GATTTGTCCC CTGATGGTCC AAAAAATGTT GCTGATACCG ATGGCGATGG CTTTCCTGAT
TATCTAGACT TGTGTCCAAA TAGACCTGAA ACATTTAATG GAATTGATGA CACTGACGGT
TGTCCTGATG ATGATCGTTC TATAATGGAT CGTGATCAAG ATGGAATTTC TGACGGTAAA
GATACTTGTC CACTAGAACC TGAGACTTAC AACAAATACC AAGACACTGA TGGTTGTCCT
GATTCAGTTG ATGGTGCACT ATCTGGATAT ACATTCCCTG ACACTGACGG TGATGGAATT
GAAGATAGAT GGGATGCTTG TATTCATGAG CCAGAAAATT ATAATAATAA TCTAGATTGG
GACGGTTGTC CTGATATTCC TGGAGTGACG AATCCTACAG CTCCTGATGC TGACTTTGAT
GGCATTCCTG ATGATGTTGA TGCTTGTCCA TTAGATCGTG AAAATTATAA TAAATTTGAA
GACACTGACG GTTGCCCAGA TGTTGTCAAA CATGTAATCT TTGGTGATTC TGATGGAGAT
GGAATACTTG ATCAAAATGA TTCGTGTCCA TTTAGTCCTG AGACTTATAA CAAATACTTA
GACACTGACG GTTGCCCTGA TTGGGTTGCT GATAACAAAC TATCTGCTGA CACTGATGGT
GATGGAATTA TTGATAATCT AGACTTGTGT CCTACTAGAC CTGAAACTTA CAATAAATTC
CAAGATACTG ATGGTTGTCC TGATGATTCA CTTTATAGAT TTGATGCAGA CATGGATGGA
ATTTTAGACA TTAATGATGC ATGCCCACTA GAACCTGAGA CTTACAATAA ATACCAAGAC
ACTGATGGTT GTCCTGATTC AGTTGATGGT GCACTATCTG GATATACATT CCCTGACACT
GACGGTGATG GAATTGAAGA TAGATGGGAT GCTTGTATTC ATGAGCCAGA AAACTATAAT
GGATTTTTAG ATGACGACGG TTGCCCTGAA ATTGTAGGTA CTTCTGGAAC TGATATGATT
GATTCTGATT ATGATGGTAT TGCAGACCAC TTGGATGAAT GTCCAACTAT TGCTGAAAGA
TATAATAAAT TCCAAGATGA AGATGGATGC CCTGACAGTG TTGTTCATCA AACAGTAGGT
GACTATGATG GAGATGGAAT ATTTGATGAT GTGGATCAAT GTCCTACTGC AAAAGAAACT
TACAATAAAT TCCAAGACAC TGACGGTTGC CCTGATTGGG TTGCTGATAA CAAACTATCT
GCTGACACTG ATGGTGATGG AATATTTGAT TATCTAGACT TGTGTCCTAC TAGACCTGAA
ACTTACAATG GATTCCAAGA CACTGATGGT TGTCCAGATG ATTCTATTTC TAAACTTGAT
TCAGATATGG ATGGAATTTT AGACATTAAT GATGCATGCC CACTAGAACC TGAGACTTAC
AATAAATACC AAGACACTGA TGGTTGTCCT GATTCAGTTG ATGGTGCACT ATCTGGATAT
ACATTCCCTG ACACTGACGG TGATGGAATT GAAGATAGAT GGGATGCTTG TATTTATGAG
CCAGAAAACT ATAATGATTA TCTAGATTGG GACGGTTGTC CTGATGTCCT AGGTGCAGAA
TCCACTGCCC CTGTATATGC TGACTCTGAT GGTGACGGCT ATCCTGATTC AATTGATTCT
TGTCCATCAA AACCCGAAAC CTGGAACAAA TATCTCGATA AAGATGGCTG TCCTGATATT
GCTCCAGAAC AACAGAGATT TGTCCATGAT GATGATCTAG ATGACATCAT TAATGATGAA
GACTTGTGTC CACTTGATCC TGAAGACTAT GATGGTGACA GAGACACTGA CGGTTGTCCT
GATCCATAA
 
Protein sequence
MKQYLLGFLI LLTITIGMTP NSVFANTTID TDGDGVPNAV DQCPHLLEDY DPEYGNNIDG 
CPADFVPWYD ADYDGIQDHV DNCPTVKETY NRFQDTDGCP DLSPDGPKNV ADTDGDGFPD
YLDLCPNRPE TFNGIDDTDG CPDDDRSIMD RDQDGISDGK DTCPLEPETY NKYQDTDGCP
DSVDGALSGY TFPDTDGDGI EDRWDACIHE PENYNNNLDW DGCPDIPGVT NPTAPDADFD
GIPDDVDACP LDRENYNKFE DTDGCPDVVK HVIFGDSDGD GILDQNDSCP FSPETYNKYL
DTDGCPDWVA DNKLSADTDG DGIIDNLDLC PTRPETYNKF QDTDGCPDDS LYRFDADMDG
ILDINDACPL EPETYNKYQD TDGCPDSVDG ALSGYTFPDT DGDGIEDRWD ACIHEPENYN
GFLDDDGCPE IVGTSGTDMI DSDYDGIADH LDECPTIAER YNKFQDEDGC PDSVVHQTVG
DYDGDGIFDD VDQCPTAKET YNKFQDTDGC PDWVADNKLS ADTDGDGIFD YLDLCPTRPE
TYNGFQDTDG CPDDSISKLD SDMDGILDIN DACPLEPETY NKYQDTDGCP DSVDGALSGY
TFPDTDGDGI EDRWDACIYE PENYNDYLDW DGCPDVLGAE STAPVYADSD GDGYPDSIDS
CPSKPETWNK YLDKDGCPDI APEQQRFVHD DDLDDIINDE DLCPLDPEDY DGDRDTDGCP
DP