Gene Nmar_1386 details

Gene Information

• Locus tag: Nmar_1386
• Symbol: radA
• ID: 5774558
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: -
• Start bp: 1268792
• End bp: 1269958
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 641317032
• Product: DNA repair and recombination protein RadA
• Protein accession: YP_001582720
• Protein GI: 161528894
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0468] RecA/RadA recombinase
• TIGRFAM ID: [TIGR02012] protein RecA; [TIGR02236] DNA repair and recombination protein RadA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGTAGAAG ATTTAAGATT AGATAGTTTA GAGGGCGTAG GTCCTGTGAC AACTAGAAAA 
TTATCCGATG CAGGTGTCCA CAACGTCATG GACCTCATCG TCAGAGGTCC TGTAGAAATT 
GCAGAAATAA CTGGAATGGA AAAGGACACT GCTGAAAAAA TTGTCAATAA AGCACGTCAA 
CATCTAGTTG ATGGTGGATT AATTGCCAAA CACTTTACAA GTGCAAGTGA AATTTACAAG 
CACCGTCAAA GTATTGGTAA AATTACAACT GGTACAAACT GTCTTGACAC ACTATTTGAT 
GGTGGTCTTG AGACACAAGC CTTGACAGAA GTTTATGGAG AATTTGGTTG TGGTAAAACA 
CAATTTGCCC ATACAATGTC TGTTATGGTT CAAAAGACCA AAGAGGAAGG TGGACTTGAA 
GGCAGTGTTT TGTACATTGA TACTGAAAAC ACTTTCAGAC CTGAAAGAAT TGTATCTATC 
GCTCAAGCTC ATGAGATGGA TCCAGAAAAA GTTCTAGACA ACATCATTGT TGCTCGTGCA 
TACAATAGTG CACATCAAAC ATTGATTCTA GAAGAAGCTG GCCCAATCAT TGAAGAAAAC 
AATATCAAAC TAATTGTTGC AGATTCTGCA GTTGGATTGT TCCGTTCTGA ATATTTAGGA 
CGAGGAACAC TCTCAAACAG ACAACAAAAA CTAAATCACT TTGTTCATCT GTTATCCAGA 
ATTGCAGAAA CTTACAATTG TGCTGCAATT GCAACAAACC AAGTTATGGC ATCTCCTGAT 
GTCTTCTTTG GCGATCCAAC TCGTCCAATT GGTGGAAATG TAGTTGCACA TACTAGTACC 
TACAGAATCT ACTTTAAGAA ATCTGGCAAG AAACGAATTG CTAGAATGGT AGACAGTCCT 
CACCATCCTG AGGAAGAGGT AATCTTTGCT CTAGGTGAAG CAGGTGTCAT TGACCCTGAA 
GAGGCTGAGA AAAAGACCAA AAAAACTACC AAAAAAGCAA CTACCAAAAA GGCAAAAGAG 
CCTGAGGTAG AGACCAAAGT AGAAACTCCT GGAGAATCTA CAGAAACTCC TGAAGTAGAG 
GTAACTGCCA AAACACCAGA AGTTGAAACT GTAGAAGCAC CTCCAGTAGA TGCTGAAGCA 
GATGATTCAG AACCTGTAGA AGAGTAA 

 

Protein sequence

MVEDLRLDSL EGVGPVTTRK LSDAGVHNVM DLIVRGPVEI AEITGMEKDT AEKIVNKARQ 
HLVDGGLIAK HFTSASEIYK HRQSIGKITT GTNCLDTLFD GGLETQALTE VYGEFGCGKT 
QFAHTMSVMV QKTKEEGGLE GSVLYIDTEN TFRPERIVSI AQAHEMDPEK VLDNIIVARA 
YNSAHQTLIL EEAGPIIEEN NIKLIVADSA VGLFRSEYLG RGTLSNRQQK LNHFVHLLSR 
IAETYNCAAI ATNQVMASPD VFFGDPTRPI GGNVVAHTST YRIYFKKSGK KRIARMVDSP 
HHPEEEVIFA LGEAGVIDPE EAEKKTKKTT KKATTKKAKE PEVETKVETP GESTETPEVE 
VTAKTPEVET VEAPPVDAEA DDSEPVEE