Gene Nmar_1334 details

Gene Information

• Locus tag: Nmar_1334
• ID: 5774711
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 1223212
• End bp: 1223658
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641316979
• Product: UspA domain-containing protein
• Protein accession: YP_001582668
• Protein GI: 161528842
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0589] Universal stress protein UspA and related nucleotide-binding proteins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.00000527962
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTTCATGG TAATAAAAAT CAAAAAAATT CTAGTTCCAT ACGATGCAAC ACCTAGTAGC 
GAAAAGGCTG TCAAAAAAGT GCTGCCTCTA ATTGAGAAGC ATGACTCAAA GATTCTATTT 
TTATCGTGTG TACATGACAA GGCGACATTT GGATTCTTTA AGACAAAGTC TGATAAACGC 
GAGATTGCCA AGGAAAAGAA AAAAGCTGAG AGACATCATG AAAGGCTGAA AAAAGAAGCA 
GCAAAATTTG GCATTCCTTC AAGCTCAAAG ATAATCAAGA GTGATTTGGA ATCAAAATCA 
ATCATTGAAT ATGCAAAAGA TCAAAACGCG GATTTAATTG TGATGAGTAA ATCAAAAATC 
GGAACACATG CTGAAAAAAT GTACTACAAC AGTACAGTTG ATGCCGTTTT CAAAAAAACG 
CCATGTCCCT TTCTATACAT CCCATAA 

 

Protein sequence

MFMVIKIKKI LVPYDATPSS EKAVKKVLPL IEKHDSKILF LSCVHDKATF GFFKTKSDKR 
EIAKEKKKAE RHHERLKKEA AKFGIPSSSK IIKSDLESKS IIEYAKDQNA DLIVMSKSKI 
GTHAEKMYYN STVDAVFKKT PCPFLYIP