Gene Nmar_1321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_1321 
Symbol 
ID5773940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp1208508 
End bp1209338 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content36% 
IMG OID641316965 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001582655 
Protein GI161528829 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.24332e-12 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCAAAAAG TAGCTCTTGT AACTGGAAGT TCTTCAGGAA TTGGATTAGA AGCATCACTA 
GCACTTGCAA AAGATGGATA TCACACATTT GCCAGTATGA GGGACACATC AAAAGCAGGA
GAATTAGAGA ATGCTGCAAA AAAAGATAAT CTTCCAATCG AAGTAATAGA GCTTGATGTC
GATAAAGAAG AATCAATTGT TTCTGCAGTA AAAAAAGTAA TAGATTCAGC AGGAAGACTG
GATGTTTTAG TTAACAATGC AGGATATGGA CAGTTTGGAT GTACAGAAGA TGTCTCAGTT
GATGATTTTA GAAAACAATT TGAAACTAAT TTCTTTAGTA TTGTAAGAAT TATTCAAGAA
GTTACCCCAA TTATGAGAAA TCAAAATTCG GGAAGCATCA TAAACATTAG TTCTGTTGCT
GGAAGAATGG GATTACCAGG TTCTCCAGCA TACATTAGCT CAAAATTTGC ATTAGAAGGA
CTAGGAGAAT GTTTACGATA TGAATTAGGT CAGTTTGGAA TCAAGACCAC TCTAATTGAA
CCAGGAGTTA TCAAGACAAA CTTTTTTGAA TCAATGAAAA TTCCAGATTC AAAGACAGAC
CCAAAATACA AGGAATTAAC TGATCACATC TTAGCAGGAT TAAAGATGAT GGTTCAGATG
GGCACTGCTC CATCACAAGT AGCTGAAGTA ATTATCAAGG CAATTCATGA TGATGAGATG
CTTCCAAGAT ATGTGGTTGG AACTGATGCT GCAATGTTTA TGGAGGCAAA AAAGATGAAG
ACAGACCTAG AATTTGAGAA ATACATGAGC AAAGAGCTCT TTCCAGGATA A
 
Protein sequence
MQKVALVTGS SSGIGLEASL ALAKDGYHTF ASMRDTSKAG ELENAAKKDN LPIEVIELDV 
DKEESIVSAV KKVIDSAGRL DVLVNNAGYG QFGCTEDVSV DDFRKQFETN FFSIVRIIQE
VTPIMRNQNS GSIINISSVA GRMGLPGSPA YISSKFALEG LGECLRYELG QFGIKTTLIE
PGVIKTNFFE SMKIPDSKTD PKYKELTDHI LAGLKMMVQM GTAPSQVAEV IIKAIHDDEM
LPRYVVGTDA AMFMEAKKMK TDLEFEKYMS KELFPG