Gene Nmar_1320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_1320 
Symbol 
ID5774527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp1206022 
End bp1208469 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content36% 
IMG OID641316964 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001582654 
Protein GI161528828 
COG category[R] General function prediction only 
COG ID[COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.20865e-12 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCACGTCT CATGTAGTGG TTGTGGAATA GAAGATCTCC TAGAGTTCTC AAAGAATGTA 
GATGAAGTGT TTTTAGAATT TCTTTCAAGA TATGACAAGG GACTAGTCAC AGAGAAAGGA
CTTTCTGAAG GCCTCAAAGA TGAGGGAATT GTCCGTGCTG AAGTTGAAAT CAAAAATATG
ATTGGCAAAA ACAAGCCAGA CAAAATAACT GAAGAGATTC TATATTCCAA AAAAGACTAT
GTTTCACAAT ACAAGGTTTT GAGCAATCCT GAGCCTAAAA TGGGCTGCAA AGTAGAAGAT
TTGGGACTAG ATGAATCAAT TACAGAACAT CTAAAGGAAT TGGAAATAAA ACAGTTTTAC
AAATTCCAAG AAGAGGCAAT TAGTGAGATT GCATATGGAG AAAATGTAGT AATTGAAGCT
CCAACTGCTT CAGGAAAAAC AGAAGCCTTT TTGATTCCAG TAATTCAGAG AATAAAAAAA
GATTCCAGCG AAGGTAATGT CTTTGCAATC TTTGTATACC CAACAAAAGC ACTTGCACGA
GACCAATTCC CTAAAATCAA AAAATTTGTA GAAAAGATTG GGGTTAGAGT AGAGGTCTTT
GATGGAGACA CAAAACAAAA CGACAGAAGA GAAATAATTG ATAATCCACC ACAAATTCTT
GTTACAAACT TTGATGTATT GCACTATCAT ATGTGGCACC AAACAAAATT CTCATCATTA
CTAACAACAA CAAGAATTAT AGTTACAGAT GAAGCACATG TCTATTCAGG AATTTTTGGT
TCTAATGTTC ACTATATCAT AAAGAGACTC AAAAGAGTAT GTACAAACAA GCTGCAATTT
GTTGCGGCAT CAGCTACACT TGAAGATGCA AAAGAATTTT GTGAAAAATT GTTTGGAGAA
AAGATGCAAA AAATTCAAGG GTCAGGAAAG AAAGGCCAGA CAGACTTTGC AATGCTTTTC
CCATCACTTC GAACTCAAAG GGCTTTGATG GTAGAACTCA CAAAGAAACT AACTGAGAAA
AATCACAAGA CTATGGTCTT TAACAACTCG CATCTAAATT CCGAACTTTT AGCAATTCAG
GCAAAAAAGC AAAAGGTCAA CATCAAAGTT CACAGAGCAG GACTGATGGC AAATTACAGA
ACATTTGTTG AAAAACAGTT CAAAGATGAT TTACTTGATG CAATTTCATG CACTCCCACG
CTTGAATTAG GCATAGATGT GGGAAATGTT GACTGTGTTA TCTCATCTAC CATACCAGTA
AATCGACTAA TCCAAAGAAT AGGAAGAGCC GCAAGAAAGG GTCAAAGAGG TTATGCATTT
TTGGCATTGG GAAATGACCC AATATCACAA TATTACAAGA ATCATCCAGA TGACTATTTT
GAGGATACTG AAAAAACCTA CATCGATCCC AAGAATCCAT TTGTAGAAGA GTTCCAGGTA
TTAGCAATGG CATGTGATAG ACCAATCTCA AAACATGAGC TTAAAGAACA TCAAGAAGTA
ATAGAGCACC ACATCATCAA AGAGAATCTA AAAGAATTCA ACAATAGAAT AATTCCAAAT
TTTGACAAGA TCAATTCTTT ACTCAATGAA TACAGTATTA GAGGAATAGG ACAATCAATT
GATATTTTCT TAAATGGTAA AAAAGTAGGA GATAGAATTT TACCAATTGC ATTAGAGGAG
TTACACAAAG ATGCAATCTA TTTTCTTGCA GGTATTCGTT ATAAAGTAAA AGAGTTTGAT
TATCCAGAAA AAAACTATGC AAAGATTGAG AAAATTCCAA GAGATTATCC ATACTATACT
AAAGCACTAA CTGAAGAATG GCCTACAATT GAGACAGTTT TTGATAAAAG GATTGCAAAC
GGAGTTGAAG TTGCATTTTG TAAACTACAC ATTGAGAAAA AAGTATACGG CTATGTCAAC
ATTGAGCTTG GACAAGAAGT AACACAAGGA GAAAAAGTTC TGCTAGATAC ACCTCTAGAA
TATGATTTTG TTACAAAGGG GATTGTCTTT CATGCACCTA GACCTCTCAA AGTAATGGGA
GAATCTGAAG ATGAGGAATA TACTGAAGCC AGCGGATACC ATGCAACAGA GCATGTAGTG
ATTGAGGGAA GCAATATGAT TACTGGTGGA GTCTCTCAGG ATTTGGGAGG CATATCACTG
GGAACATCAG GCTTGATTTT CATCTATGAT GGGGCAATTG GAGGAAGTGG GGCAAGCAAA
GCTCTCTATG ATAGATTTGA GCAGGCACTG GAGAGAAGCA TGTTCATTGT AAAGGAATGT
CCATGCAAAA ATGAAGCCGG ATGTCCAAGA TGTACATTCT CATACAGATG TGGAAACAAC
AACGAATATC TGCACAAATA TTCAGCACTA GAGATTTTGG AGAGAATTAA CAAAGGAGAG
AAAACAGAAC TAGTTGATCC AACTGAAGGT GACAGACCTC TAGTATAA
 
Protein sequence
MHVSCSGCGI EDLLEFSKNV DEVFLEFLSR YDKGLVTEKG LSEGLKDEGI VRAEVEIKNM 
IGKNKPDKIT EEILYSKKDY VSQYKVLSNP EPKMGCKVED LGLDESITEH LKELEIKQFY
KFQEEAISEI AYGENVVIEA PTASGKTEAF LIPVIQRIKK DSSEGNVFAI FVYPTKALAR
DQFPKIKKFV EKIGVRVEVF DGDTKQNDRR EIIDNPPQIL VTNFDVLHYH MWHQTKFSSL
LTTTRIIVTD EAHVYSGIFG SNVHYIIKRL KRVCTNKLQF VAASATLEDA KEFCEKLFGE
KMQKIQGSGK KGQTDFAMLF PSLRTQRALM VELTKKLTEK NHKTMVFNNS HLNSELLAIQ
AKKQKVNIKV HRAGLMANYR TFVEKQFKDD LLDAISCTPT LELGIDVGNV DCVISSTIPV
NRLIQRIGRA ARKGQRGYAF LALGNDPISQ YYKNHPDDYF EDTEKTYIDP KNPFVEEFQV
LAMACDRPIS KHELKEHQEV IEHHIIKENL KEFNNRIIPN FDKINSLLNE YSIRGIGQSI
DIFLNGKKVG DRILPIALEE LHKDAIYFLA GIRYKVKEFD YPEKNYAKIE KIPRDYPYYT
KALTEEWPTI ETVFDKRIAN GVEVAFCKLH IEKKVYGYVN IELGQEVTQG EKVLLDTPLE
YDFVTKGIVF HAPRPLKVMG ESEDEEYTEA SGYHATEHVV IEGSNMITGG VSQDLGGISL
GTSGLIFIYD GAIGGSGASK ALYDRFEQAL ERSMFIVKEC PCKNEAGCPR CTFSYRCGNN
NEYLHKYSAL EILERINKGE KTELVDPTEG DRPLV