| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1120 |
|---|
| Symbol | |
|---|
| ID | 5773659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1022506 |
|---|
| End bp | 1025703 |
|---|
| Gene Length | 3198 bp |
|---|
| Protein Length | 1065 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641316762 |
|---|
| Product | isoleucyl-tRNA synthetase |
|---|
| Protein accession | YP_001582454 |
|---|
| Protein GI | 161528628 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0060] Isoleucyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00392] isoleucyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.439306 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTAT CTACAAAGTT TGATGCAAAA GCAATCGAAT CAGAGATTAA AGAATATGTA
AAATCAATTG ATTTAGAAAA GCAGATTTTT GCATCAGACA AGCCTGAAAA GATCAGATTC
ATTGAAGGTC CACCTACAAT GAACGGAATT CCTCACGCAG GACATCTTAG AGGCAGAGTC
ATCAAAGATT TGTGGTATAG GTACAATACA CTCCAAGGGA AGAAGATTGA ATTTAATGGA
GGATGGGACA CACAAGGACT TCCTGTAGAA CTACAAGTTG AAAAAGAGCT GGGAGTTACA
GGTGGAAAGA CTGAAGCAAT CAAACAATTT GGGGTAGAGA GAATTGTATC TGAATGCAAA
AAAGTTGTTG AAAAATACAA CAAGACATGG GTAGAAGTTG ATGAATTACT TGGGATGTCA
TTTAATCATG ATAAAGCATA TTGGACTTTT AGAGATGAAT TTATTGAAAG AGAATGGCAA
GTTCTAAAAA AAGCACACGA GAATGGAATT TTAGAAGAAG ATTTTACAGT TATTGCATAT
TGTCCTAGTT GTCAGACATC ACTTAGTCAT GCAGAAGTTA ATCAAGGGTA TGAAGAAGTA
AAGGACCCAT CACTATACTA TAAAGTAAAA CTGGTAGATG AAGATGTATT TTTGATTGTA
TGGACTACAA TGCCATTTAC ACTAGTTACT GATGCAATGG TAGGATTACA GCCAGAAGAA
GATTATGCTT ATGTCAAAGT AGAAAATGAA ACTTGGGTTG TTGGAAAAAC AAGATTAGAA
GAATTCATGA CTGAAGTAAA AATTGAAGAT TACAAAATCG AAAAGACTGT CAAAGGTTCA
GAATTTGAAG GGAAAAAATA CATCCATCCA TTATTGGATT TGATTCCAGA GTTAAACGAA
TGCTCAAAGG CAGACAATTT CCATGTAGCA GTATCAGAAT CGTTCGTTGA TGCTAGTACT
GGTAGTGGTC TTGTACATCT GTCTCCAGCA AACGGTGAGG AAGATATCAA GATTGCAAAC
AAGAGAAAAG TCAAGATTTT CAGCCCCATA GATGACGAGG TAAAGTTCAC TTCTCAGGCA
GGAAAATACC AAGGAATGTT TGTCAGAGAT GCGGACAGAC CAATTGTAGA AGATTTGAAA
GAGTGTAATG CTCTAGTAAA GATTGGCAAA ATCAAACACA AGTATCCACT TTGTTGGAGA
TCACACCATC CAATTGTATG GCTTGCAAGA AAGGGTTGGT TCTACAAACT AGACAGACTA
GATAACAAGG CAATTGATGC AGCAGAAAGT GTAGAGTATT ATTTTGAACA ACCAAAAAAC
AGATTCTTAG GAATTATCAA AGAGAGACAT CCTTGGTGTA TCTCAAGGGA GAGAATTTGG
GGATGTCCAT TGCCAGTATG GGCATGTGAA GAATGCAATG AAAGAAACTG GTTTTTTACA
AGAAAAGAGA TTGTAGAATC AGCTGACAAT CTTCCTGATG GCCCAGACTT TGAATTACAC
AGACCATGGA TTGATAACAT TACAATAAAG TGTAAAAAAT GTGGCAGTAC AAAAACAAAG
AGAGAAGAAT ATGTTTTAGA TACTTGGCAC AATAGTGGTT CTGCACCATA TTCATCATTA
ACTGATGAAG AGTACACAAA CGAAATTCCA GCACCATTCT TCACTGAAGG AATTGATCAA
ACTAGAGGAT GGGCATATAC ACTACTCATT GAAAATGTAA TTCTAAACAA CGGACCAACC
CCACCATACA AGTCATTCTT GTTCCAAGGA CATGTACTTG ATGAGAAAGG AGGCAAGATG
AGCAAGAGTA AAGGCAATGT TTTGGAAGGA ATTGAATTAC TAGAAAAATA TCCTGCAGAT
TTGATTAGAT TTTATTTCAT GTGGAAGGCT AGTCCAATTG AACCACTTAG TTTCAGTACA
GAAGAGTTAA TGTCAAGACC ATATCAAGTA ATCAACACAC TATTCAATTT ACACTTGTAC
TTTAAGCAAA ACAGCCAGTA TGATAACTTT GAAAAAGAAA ACACGATAGA GTGGGCAAAA
CAAAAGAATT TGTTAACATC ACCAGACATT TGGCTCTTAT CAAAACTTCA AAAATTAATC
TCAAAAATTA CAGACCGCAA TGATTCTTGC AAATTTCATG AAGGTGCAAA AGCAATTGAC
GACTTTATCA TTAACAATCT AAGTCAAATC TACATTCCAA TTACAAGAGG AGAATTGTGG
GATGAAGACG AGGATAAAAA GGAGAGAAGG CTTGCAATTT ATGCAGTACT AGAGGAAGTT
CTAAGAACAT TAGATATCTT GATTCATCCA TTTTGTCCAT TTACCAGTGA GCATCTGTAC
CAAACAGTCT TTGATGGAAA ACAAAGCATA CTACTAGACA AATGGCCAAA ATCACAAGAG
TCACTAGTCA ATGAAGAGAT TGAAGAATCA TTTGACATTA TGAAAGATGT AGTATCAGTT
TCATCAGCTG CAAGAATGAA AGGCAAACTC AAAAGAAGAT GGCCATTAAA TGAAGCAAAA
ATTTGTGTTA AGAAAGGACT AAAGTCAAAG TTAGAATCAC TATCAGAACT ACTCCAGTCT
CAGCTAAATG TAGAGAAATT CAGCATTGCT GAAACTGAAA AAGAATCAGG ATTAGAACAA
ATTTTAGAAT TAAAACAACT AGGACTGCCT GCAAAGCCAA TTGTTGAATT GGAAAGAAAG
AGAATCGGGC CAAAAGCAAA ACAACACATG GGAAAACTTG TTGCAAAGTT CTCTGAAACA
AATCCTGATG AAATAATTTC ATCTTTACAA AATAATTCAA AGTTTGATTT TGATATTGAT
GATGAAACGA TTTCACTTGA CAATGAAGAT TTTGTTGTAG ACTTTGATGC TGATGAAAAT
TATGCAATGT CAAAAAGAGA TGATTATGTA GTGTTTATCT CAACATCGCG AAACAAAGAG
ATGATGGCAA AAGGATTAGT CAAAGATGTT GCAAGAAGAT TGCAAACTTT GAGAAAAGAG
AGAGGATACA ATCCAACTGA TGTTTTAGGA GTCGCATCAA TTCTTGATTT AGATGAAGAA
TCACTTGAAA TGATCAAAGA AAAATCAGAA GACTTGGCTT TCTTGGTAAG AGTAAAGCAA
GTCAACTTTA CAGAATCATG TAAAGAATAC AAAGATGACG ACATTGATGG TCAGAAGATT
AGAATTTCAG TAGAGTAA
|
|---|
| Protein sequence | MELSTKFDAK AIESEIKEYV KSIDLEKQIF ASDKPEKIRF IEGPPTMNGI PHAGHLRGRV
IKDLWYRYNT LQGKKIEFNG GWDTQGLPVE LQVEKELGVT GGKTEAIKQF GVERIVSECK
KVVEKYNKTW VEVDELLGMS FNHDKAYWTF RDEFIEREWQ VLKKAHENGI LEEDFTVIAY
CPSCQTSLSH AEVNQGYEEV KDPSLYYKVK LVDEDVFLIV WTTMPFTLVT DAMVGLQPEE
DYAYVKVENE TWVVGKTRLE EFMTEVKIED YKIEKTVKGS EFEGKKYIHP LLDLIPELNE
CSKADNFHVA VSESFVDAST GSGLVHLSPA NGEEDIKIAN KRKVKIFSPI DDEVKFTSQA
GKYQGMFVRD ADRPIVEDLK ECNALVKIGK IKHKYPLCWR SHHPIVWLAR KGWFYKLDRL
DNKAIDAAES VEYYFEQPKN RFLGIIKERH PWCISRERIW GCPLPVWACE ECNERNWFFT
RKEIVESADN LPDGPDFELH RPWIDNITIK CKKCGSTKTK REEYVLDTWH NSGSAPYSSL
TDEEYTNEIP APFFTEGIDQ TRGWAYTLLI ENVILNNGPT PPYKSFLFQG HVLDEKGGKM
SKSKGNVLEG IELLEKYPAD LIRFYFMWKA SPIEPLSFST EELMSRPYQV INTLFNLHLY
FKQNSQYDNF EKENTIEWAK QKNLLTSPDI WLLSKLQKLI SKITDRNDSC KFHEGAKAID
DFIINNLSQI YIPITRGELW DEDEDKKERR LAIYAVLEEV LRTLDILIHP FCPFTSEHLY
QTVFDGKQSI LLDKWPKSQE SLVNEEIEES FDIMKDVVSV SSAARMKGKL KRRWPLNEAK
ICVKKGLKSK LESLSELLQS QLNVEKFSIA ETEKESGLEQ ILELKQLGLP AKPIVELERK
RIGPKAKQHM GKLVAKFSET NPDEIISSLQ NNSKFDFDID DETISLDNED FVVDFDADEN
YAMSKRDDYV VFISTSRNKE MMAKGLVKDV ARRLQTLRKE RGYNPTDVLG VASILDLDEE
SLEMIKEKSE DLAFLVRVKQ VNFTESCKEY KDDDIDGQKI RISVE
|
|---|
| |