| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0948 |
|---|
| Symbol | |
|---|
| ID | 5773366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 824647 |
|---|
| End bp | 827205 |
|---|
| Gene Length | 2559 bp |
|---|
| Protein Length | 852 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641316587 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001582282 |
|---|
| Protein GI | 161528456 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.158363 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCA ACATGGAAGA AACTAAAAAA ATAGAATCAA TGCCGCCATC CATGTTAGTA
TCAGCTACAT ATGATAATAA TTCAAAATCA GCAGTTTTAA AATTCTATGA ACCAGAATCT
CAAAAATTAT TTTTGTGGAA AGATGAAATT GGTCACAAAC CATATTGTTA TTCACGATTA
GCTCCAGATG AATTAGATTT TCTTCAAGAA AGAGATGATG TTTTAGAAAT CAAAACAACT
CAAAGATATG ATTTAATCAA AGATAAAGAA ATTGACATGT CAAAGATTAC AGTAGCAGAT
CCTCTTGCAA TCGGAGGAAC TGCAGGAGAC AAGAGTATTA GAAATGTAAT AGAGACATGG
GAATCAGACA TCAAATATTA TGAAAATTAT CTATATGATA GAAAACTAAT AGTTGGAAAA
TATTACGAAA TCAAAGATGG GAAAATAGTA TCACATGATC TTGAGATTTC TGATGAAGTA
AAGATTGCTT TGAAGAGTTT GTTGTGGGAT AAAGTAGATA GTGAAAGCAT GGTAGATGCT
GAAGGATTCA AAAAGTTTGT TTCAGAGTGG GCAGATTTGC TCAATCAACC TATTCCAAAA
ATAAAACGAC TCAGTGTAGA TATTGAAGTA GAAGCAGAGA TTGGAAGAAT TCCCGACCCA
AAAATTGCCG AAAAGAAAGT CACTGCAATT GGATTGAAAG GTTCTGATGG ATTTGACCAG
ATTTTTGTGC TCAAAACAGA GGGAACTGAA CAAGGAACAA ACGAATTGGA CCAAAATATC
AAAGTGACAT TTTATGATTT AGACAAAGAA AAAGAGATGA TTTATGATGC ATTTAAGATA
ATCAAAGAAT TTCCATTTGT TGTAACATAC AATGGCGATG AATTTGATTT ACCATATTTG
TACAACAGAG CAGAAAGATT GGGAATAAAG AGTTCAGAGA ATCCATTTTA CATGATGAGG
GATTCTGCAA CACTCAAACA CGGAGTTCAT CTTGATTTGT ATAGAACGTT TTCAAATAGA
TCATTTCAAA TCTATGCCTT TAGTCAAAAA TATACAAATT TCTCATTAAA TGAAGTTTCA
AAGGCACTAC TTGGAAAAGA GAAAATAGAC TATGGATTAG AGTTTGATCA ACTAACACTA
TACCAAACTG CAAACTATTG TTATAATGAC GCTCTGTTAA CCTATGAACT TACAAGTTTT
AACAGCGAAT TGTTAATGCA ACTACTTGTA ATCATTGCAA GAATTGGAAG AATGCCAATT
GACGATATTG CAAGAATGGG AGTATCACAA TGGATTCGTA GTCTTTTGTA TTATGAACAC
AGAAAGAGAA ATTGTCTAAT TCCAAAAAGA CAGGAGCTTG AAAGAAGATC AGAAGGAGTA
ATGTCAGATG CAGTAATCAA AGATAAAAAA TACAGAGGAG GTCTAGTTGT TGAACCAAAA
GAAGGAATAC ATTTTGATGT AGTAGTAATG GACTTTGCAA GTCTATATCC AAGCATTATC
AAGGTTAGAA ATCTATCATA TGAAACAGTC AGATGTCCAC ATGAGGATTG TAAGAGAAAT
GAAGTTCCAG GAACAAATCA CTGGACTTGC TCAAAGAAGA ACGGTCTAAC ATCCATGATT
ATTGGCTCAC TAAGGGATTT GAGGGTAAAT TACTACAAGA GTTTATCAAA AAAAGAGACG
CTAACTGATG AGCAAAGGCA GCAATACACA GTAGTCAGCC AAGCACTCAA GGTAATTCTA
AACGCAAGCT ATGGGGTAAT GGGAGCTGAA ATATTTCCAT TGTATTTCCT TCCTGCAGCA
GAAGCTACAA CTGCAATTGG TAGACATACA ATTCTAGAGA CTATCAAAAA ATGTGAATCT
GCAGGTATTG AAGTTCTTTA TGGAGATACA GACTCGTTGT TTATCAAGAA TCCAACCAAG
GAACAAATCC AAATTGTAAT TGATCAAGCA AAAAAAGATC ATGGTGTTGA TTTAGAAATT
GACAAGACAT ACAGGTACTG TGTACTTAGT AACAGAAAGA AAAACTATCT TGGAGTTACC
AAAGAAGGAA AAGTAGATGT CAAAGGACTC ACAGGAAAAA AATCACACAC TCCGCCATTT
ATCAAAAAAT TATTTTATGA ATTACTTGAT GTTTTATCTA AAGTTCAGAC AATAGAAGAT
TTCGAGAAAG CAAAAAAAGA GATTTCTGAA AAAATTGCAA CCTGTGGCAA AAAAGTAGAG
GCAAAAGAGA TACCATTAGA AGATTTGACA TTTAACGTAA TGCTTAGTAA AGCTCCATCA
GAATACACAA AAACAATTCC ACAACACATA CGTGCAGCAA AACAACTTGA AACTATACGA
GAGATAAAGA AAGGAGACAG AATTTCTTAC ATCAAAATTC TAAACAAGCC AGGGGTCAAA
CCAGTGGAAA TGGCAAAAAA AGAGGAAATC GATTCTAAAA AATACATGGA GTTTATGGAA
TCAACACTTG AGCAAATCAC ATCATCAATG GATTTGGATT TTGATACAAT TTTAGGAAAA
CCAAAACAGA CAGGATTAGA CGAATTTTTC TGGAATTAG
|
|---|
| Protein sequence | MQVNMEETKK IESMPPSMLV SATYDNNSKS AVLKFYEPES QKLFLWKDEI GHKPYCYSRL
APDELDFLQE RDDVLEIKTT QRYDLIKDKE IDMSKITVAD PLAIGGTAGD KSIRNVIETW
ESDIKYYENY LYDRKLIVGK YYEIKDGKIV SHDLEISDEV KIALKSLLWD KVDSESMVDA
EGFKKFVSEW ADLLNQPIPK IKRLSVDIEV EAEIGRIPDP KIAEKKVTAI GLKGSDGFDQ
IFVLKTEGTE QGTNELDQNI KVTFYDLDKE KEMIYDAFKI IKEFPFVVTY NGDEFDLPYL
YNRAERLGIK SSENPFYMMR DSATLKHGVH LDLYRTFSNR SFQIYAFSQK YTNFSLNEVS
KALLGKEKID YGLEFDQLTL YQTANYCYND ALLTYELTSF NSELLMQLLV IIARIGRMPI
DDIARMGVSQ WIRSLLYYEH RKRNCLIPKR QELERRSEGV MSDAVIKDKK YRGGLVVEPK
EGIHFDVVVM DFASLYPSII KVRNLSYETV RCPHEDCKRN EVPGTNHWTC SKKNGLTSMI
IGSLRDLRVN YYKSLSKKET LTDEQRQQYT VVSQALKVIL NASYGVMGAE IFPLYFLPAA
EATTAIGRHT ILETIKKCES AGIEVLYGDT DSLFIKNPTK EQIQIVIDQA KKDHGVDLEI
DKTYRYCVLS NRKKNYLGVT KEGKVDVKGL TGKKSHTPPF IKKLFYELLD VLSKVQTIED
FEKAKKEISE KIATCGKKVE AKEIPLEDLT FNVMLSKAPS EYTKTIPQHI RAAKQLETIR
EIKKGDRISY IKILNKPGVK PVEMAKKEEI DSKKYMEFME STLEQITSSM DLDFDTILGK
PKQTGLDEFF WN
|
|---|
| |