Gene Nmar_0551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0551 
Symbol 
ID5772945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand- 
Start bp491292 
End bp491963 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content31% 
IMG OID641316184 
Product3-dehydroquinate dehydratase 
Protein accessionYP_001581885 
Protein GI161528059 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0710] 3-dehydroquinate dehydratase 
TIGRFAM ID[TIGR01093] 3-dehydroquinate dehydratase, type I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.93599 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTACA AAACTTGTGT ATCAATTGCA GAAAAAACAC CTAACAAAGT CAAACAAACA 
TTAAAGATTG CTTTAAAAAA ATCAGATTTT GTTGAGATAA GATTTGATTT TCTAAAAATT 
GAACAAATTC CACAAACATT AGAACTAATC AAAAAAGATT TGAAAAAATC AGTATGTACC 
TTAAGACCAA AAACTGAAGG AGGTCAATTT CCAGGAAATG AAAAAGAAAG AATTGCAATA 
ATAAAACTGA TTGCAGAGTA TAATCCGTAT TTACTTGATG TAGAGTTTAA CACTCTGAAA 
CGAAATTCAT CACTAGTAAA ATATCTAAAA TCAACAAAAA CAAAACTACT TGTTTCATGG 
CATGACTTTA AGAAAACTCC AAGTTCTGCA GAGTTAAAAA AGAAAATGAA TCAGATGAGT 
AAATTCTCAA ATTTTGTAAA AATTGTCAGC ACAGCAAAAT CAACTGATGA TTCAACAAGA 
ATGCTTGAGT TATACAGCAA GAAAGGAAAA AACAACCTAA TCTCATTTGC AATGGGCGAT 
TTTGGCAGAA TTTCAAGGAT TTTGTGCCTG TATTTGGGCA GTCCATACAC GTATGTCTCT 
CTAGGAAAGC CAGTTGCACC AGGTCAGTTC AGTGTTGACG AAGTAAATAA AATCACTAAC 
TTGAAAAAAT AA
 
Protein sequence
MKYKTCVSIA EKTPNKVKQT LKIALKKSDF VEIRFDFLKI EQIPQTLELI KKDLKKSVCT 
LRPKTEGGQF PGNEKERIAI IKLIAEYNPY LLDVEFNTLK RNSSLVKYLK STKTKLLVSW 
HDFKKTPSSA ELKKKMNQMS KFSNFVKIVS TAKSTDDSTR MLELYSKKGK NNLISFAMGD 
FGRISRILCL YLGSPYTYVS LGKPVAPGQF SVDEVNKITN LKK