| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0476 |
|---|
| Symbol | |
|---|
| ID | 5774152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 428394 |
|---|
| End bp | 429179 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641316108 |
|---|
| Product | ABC transporter |
|---|
| Protein accession | YP_001581810 |
|---|
| Protein GI | 161527984 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01247] daunorubicin resistance ABC transporter membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0918062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTT TGATGTATGA TTCTTACACA ATTTTTTGGA GAGAGCTAAA GAGATACAAA
AAATCTCGAA GTGGTGTTTT AATCAGACTG ATACAACCTG CAATTTGGAT TATAGTTATA
GGAAATACGT TTTCAGGAAC TCAACCACTG ATACAGTCAG TTGGTTTTGA AGGTGAATAC
ATTGAATTTA TGGCACCTGG TGTCATTATA CTTACTGCAA TTTTTACAAG TATTTTTGGT
GGTGTAAACA CTTTGTGGGA TAGACGCTAT GGTTTTATGA ATAAAGCATT AACATCACCA
ATCTCTCGTT CTGCAATTGC ATTAGGAAAA ATGTCTGCAA TCTCATTAAT TGCAGCTCTG
CAAGCTAGTT TGATTTTGGG AATTGCTTTG GCGATTGGTG TAACATTTCC AAATCCAATA
ATGATTGCTC CAATCATGGC AATTGTTATT TTGTTTTCTT TAGGATTTTC TGGAATCTCT
GTGATGGTTG CAGCTACTGC AAAGTCTCAA GAAACCTTTT GGGGAATAAT CAATTTCCTT
GGAATGCCAT TATTCATGTT GAGCCCTGCA TTATTCCCAT TAGAGTTGCT GCCTAACTGG
CTTGCAACTG TTGCAAAACT AAACCCTGTC ACGTATACTG TATTGCTTGT AAGAGAGATG
ATGACGGGTG TGTCTGAAGG AGGCGTGTCT GTTCTTCTCA GCCTTGGCAT TATCTTTGTC
TTTGTATTGG TGATGGTTGG GCTTGCAAGC TATGTGTTTA CTCGTGAGGT AAACAAGCCA
TTTTGA
|
|---|
| Protein sequence | MNTLMYDSYT IFWRELKRYK KSRSGVLIRL IQPAIWIIVI GNTFSGTQPL IQSVGFEGEY
IEFMAPGVII LTAIFTSIFG GVNTLWDRRY GFMNKALTSP ISRSAIALGK MSAISLIAAL
QASLILGIAL AIGVTFPNPI MIAPIMAIVI LFSLGFSGIS VMVAATAKSQ ETFWGIINFL
GMPLFMLSPA LFPLELLPNW LATVAKLNPV TYTVLLVREM MTGVSEGGVS VLLSLGIIFV
FVLVMVGLAS YVFTREVNKP F
|
|---|
| |