Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_0347 |
Symbol | |
ID | 5773966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | + |
Start bp | 309504 |
End bp | 312851 |
Gene Length | 3348 bp |
Protein Length | 1115 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 641315975 |
Product | DNA-directed RNA polymerase subunit B |
Protein accession | YP_001581681 |
Protein GI | 161527855 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGATT CATCCACAAA ACGTTGGCCA GTAATTCAAG ATATTTTGAA AAGAGAGGGT ATTGCACGTC AGCACCTAAA CTCATTTGAT GAATTTTTAG AAAGAGGATT ACAAAGTATT ATCAACGAGG TTGGTCAGAT CGATATTGAA AATGCTGAGT ACCCTTACAA AATTCAACTA GGTAAAGTCA AATTACAACA ACCAAGAATG ATGGAACTTG ATGGTTCTAT TACTCATATC ACTCCTGCAG AAGCTAGATT GAGAAACGTA TCTTATTCTG CACCTGTAAT GATGGAAGCA AGTGTTGTTG AAGATGGAAA AATCCTTGAA TCAAGATTTG TCCACATTGG TGATGTTCCC GTTATGGCAA AATCAAACGC TTGTATCTTA CACAATTTTT CTACTCAAAA ACTAGTTGAA CATGGTGAGG ATCCAAACGA TCCTGGTGGT TACTTTATCA TTAATGGTTC TGAGAGAGTA ATTGTTGGAT TAGAAGATCT TTCTTACAAC AAAATCATTG TTGATAGAGA AACAGTAGGT GGAAACATTG TACACAAAGC CAAAGTTTAT TCTTCAATTG TTGGCTATCG TGCAAAATTA GAACTTGTCA TGAAAAATGA TGGACTAATT GTTGCCAGAA TTCCTGGTTC TCCAGTTGAT ATTCCAGTAG TTACTTTGAT GAGAGCTCTA GGTTTAGAAT CTGATAGAGA GATTGCAGCA GCAGTTTCAT TGGTAGATGA ACTCCAAGAT GAACTAGAAG CATCTTTTGA AAAAGCAGGA GATGTTCCAA CTGCAAAAGA TGCCATTGTT TACATCAGTA AGAGAATTGC CCCTGGAATG CTTGAAGAAT TTCAGATTAA ACGTGCTGAG ACTTTACTTG ATTGGGGTTT GTTGCCTCAC TTGGGCAAAC ACCCTGAAAA TAGAAAAGAA AAAGCGCAAT TCTTGGGAGA AGCAGCTTGT AAATTATTAG AACTAAAACT TGACTGGATT AGACCTGATG ACAAAGACCA CTATGGAAAC AAAGTCATTA AATTTGCAGG ACAGATGCTT GCAGACTTGT TTAGAACTGC ATTTAGAAAT CTTGTCCGTG ATATGAAATA TCAATTAGAA CGTTCTGGAC AAAAACGTGG AATTAATGCA GTAGCTGCTG CAATTCGTCC AGGAATTATT ACTGATAAAC TAAACAACGC AATTGCCACT GGAAACTGGG GTCGAGGCAG AGTAGGTGTT ACTCAATTAC TTGATAGAAC AAACTATCTT TCTACAATTA GTCACCTTAG AAGAATTCAG TCTCCACTAA GTAGAACTCA GCCAAACTTT GAAGCAAGAG ACCTGCATGC AACACACTTT GGAAGAATTT GTCCAAGTGA AACTCCTGAA GGCTCTAACT GTGGTCTTGT AAAGAATCTT GCATTATCTG GAATAATTTC TGTAAACGTA CCATCTGAAG AAATTGTAGA GAAACTCTAT GATCTTGGAA CTGTCCACTT CTTTGATGCA AAAGAAGATT TGAAGAAAGA CGGAACTAGA ATCTTTGTTG ATGGTAGACT AATTGGATAT TACAAAGATG GTGAACAACT AGCAGAATCT CTTAGAGACT TAAGAAGAAA CTCAAAGATT CATCCACATG TTGGTGTATC CTTCCACAAA TCTGAAATTG AAGGTTCAAC CCGAAGACTT TACGTAAACT GTAATGCAGG ACGTGTTTTA AGACCACTAA TCATCATTAA AGATAACAAA CCATTACTTA CTGCTGATTT ACTAGACAAA ATTTCAAAGA AACTCATCTC GTGGACTGAT CTCTTGAGAA TGGGTGTTTT GGAAATGATT GATGCAAATG AAGAAGAGAA CTGTTATGTC ACACTAGATG AAAAGGATAC AAAGAAACAC ACTCACCTTG AAGTCTTCCC ACCAGCAATC CTTGGTGCAG GTGCTTCAAT CATTCCATAT CCTGAACACA ACCAATCTCC AAGAAACACA TACGAGTCTG CAATGGCAAA ACAGAGTTTA GGATTCTCAA CCCCTATGAT GAATACAAGT ACATATGTTA GACAACACTT TATGCTATAT CCTCAGGTTC CAATAGTTAA CACAAAAGCA ATGAAACTTT TGGGATTAGA AGATAGACCT GCAGGTCAGA ACTGTGTGGT AGCAGTGTTA CCATTTGATG GTTACAACAT TGAGGATGCC ATCGTTCTTA GTAAAGCATC AGTTGATAGA GGATTAGGAA GAACATTCTT CTTTAGAATC TATGATGCTG AAGCAAAACA ATATCCTGGT GGAATGCGTG ACGCATTTGA AATTCCAAAT GCTGAAGATA ACATCAGAGG TTACAAGGGA GAACGTGCAT ACAGACTCTT AGAAGAAGAT GGTGTTGTTG CAACAGAAGC TCCAGTAAAA GGTGGAGATA TTTTAATTGG AAAAACTAGT CCTCCAAGAT TTATGGAAGA ATACCGAGAG TTTGAATCAT CTGGTCCTTA CAGAAGAGAT ACATCAATTG GTGTTAGACC TTCAGAAACT GGTGTTGTTG ATACTGTAGT TATGACCCAA TCAAATGAAG GTGGAAAGAT GTACAAGATT AGAGCAAGAG ATATGAGAAT TCCCGAAATT GGTGACAAGT TTGCATCAAG ACATGGACAA AAAGGTGTCT TAGGAATTTT AGCTAAAGCA GAAGATTTGC CATATACTGC AAGTGGAATG TCTCCTGATG TTTTGATTAA TCCTCATGCA TTCCCATCTA GAATGACTGT TGGTATGATG ATGGAATCCA TATGTGGAAA ATCTGCCGCA TTACGTGGAA AGAGATTTGA TGGTTCTGCA TTTGTTGGAG AAAAAATGGA TGAAGTAAGA GAAGTAATGG ATGCACATGG CTTTGAATAT TCTGGTAAAG AAATAATGTA TGATGGAAGA ACTGGAAAAT CATTCCCAGT CGAAGTTTTC ATCGGAGTTG TATATTATCA AAAATTACAC CACATGGTTG CAGACAAGAT TCATGCAAGA GCACGTGGAC AAGTTCAAAT GTTAACAAAA CAACCAACAG AAGGAAGAGC AAGAGGTGGT GGCCTTAGAT TCGGTGAAAT GGAGAGAGAT TGTCTTATTG CTTATGGCGC TTCTATGATT CTTAAAGACA GATTACTTGA CGAGTCTGAT AAATCTGATA TTTTTGTATG TGAGAGGTGT GGTCTTGTTG CTTATCATGA TGTTAAACAA AGAAAATATG TTTGCAGAGT TTGTGGTGAT AAAGCCAAAG TCTCATCAGT TTCAGTTGCT TATGCATTCA AACTACTCTT ACAAGAGATG CAGAGCCTCA ACGTCGCACC AAGATTGTTA ATCAAGGAGA AACTATAA
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Protein sequence | MADSSTKRWP VIQDILKREG IARQHLNSFD EFLERGLQSI INEVGQIDIE NAEYPYKIQL GKVKLQQPRM MELDGSITHI TPAEARLRNV SYSAPVMMEA SVVEDGKILE SRFVHIGDVP VMAKSNACIL HNFSTQKLVE HGEDPNDPGG YFIINGSERV IVGLEDLSYN KIIVDRETVG GNIVHKAKVY SSIVGYRAKL ELVMKNDGLI VARIPGSPVD IPVVTLMRAL GLESDREIAA AVSLVDELQD ELEASFEKAG DVPTAKDAIV YISKRIAPGM LEEFQIKRAE TLLDWGLLPH LGKHPENRKE KAQFLGEAAC KLLELKLDWI RPDDKDHYGN KVIKFAGQML ADLFRTAFRN LVRDMKYQLE RSGQKRGINA VAAAIRPGII TDKLNNAIAT GNWGRGRVGV TQLLDRTNYL STISHLRRIQ SPLSRTQPNF EARDLHATHF GRICPSETPE GSNCGLVKNL ALSGIISVNV PSEEIVEKLY DLGTVHFFDA KEDLKKDGTR IFVDGRLIGY YKDGEQLAES LRDLRRNSKI HPHVGVSFHK SEIEGSTRRL YVNCNAGRVL RPLIIIKDNK PLLTADLLDK ISKKLISWTD LLRMGVLEMI DANEEENCYV TLDEKDTKKH THLEVFPPAI LGAGASIIPY PEHNQSPRNT YESAMAKQSL GFSTPMMNTS TYVRQHFMLY PQVPIVNTKA MKLLGLEDRP AGQNCVVAVL PFDGYNIEDA IVLSKASVDR GLGRTFFFRI YDAEAKQYPG GMRDAFEIPN AEDNIRGYKG ERAYRLLEED GVVATEAPVK GGDILIGKTS PPRFMEEYRE FESSGPYRRD TSIGVRPSET GVVDTVVMTQ SNEGGKMYKI RARDMRIPEI GDKFASRHGQ KGVLGILAKA EDLPYTASGM SPDVLINPHA FPSRMTVGMM MESICGKSAA LRGKRFDGSA FVGEKMDEVR EVMDAHGFEY SGKEIMYDGR TGKSFPVEVF IGVVYYQKLH HMVADKIHAR ARGQVQMLTK QPTEGRARGG GLRFGEMERD CLIAYGASMI LKDRLLDESD KSDIFVCERC GLVAYHDVKQ RKYVCRVCGD KAKVSSVSVA YAFKLLLQEM QSLNVAPRLL IKEKL
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