| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0116 |
|---|
| Symbol | |
|---|
| ID | 5773206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 104553 |
|---|
| End bp | 105578 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 641315736 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001581454 |
|---|
| Protein GI | 161527628 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000000347461 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TGATCATTTC TCCGACTCAA GAAGGAATTG GTGGTGTTGC TAGACATGTA
CAAGGTCTTA CAAAATTTTT AAAAAATGAT GGGCATGAAG TAGATGTAAT CTCTTCTGAA
AATACATTCA CAATTCCTAT ACGAAAATTA AAAAATCCTA GCTTCATGCT ATCTTCTTTT
TTAAAAACAA AATTTTCAAA AAAATATGAT GTAGTACATG CTCAAAATGT TGTATCTGCG
TTTGCAATGA AAAATGTTTT GGGAAAAAAA TTATTGGCAA TACACGGAAT TCATCATGAA
CAAGTAGATC ATTTACATGG AAAAACTGCT GGAAATGTAG CAAAGGATTA TGAAGATAAA
GCGTTAAACT GGGTTGACGC AATAACGGTT TCTTCAAAAG AAATGCTTGA TTATTACTCT
CAAAAAGGAT TGAACACGTT TTTTCTCCCA AATGCATTGG ATATACAATC AATTACCAAA
AAATCTAATC GAAAATTTGA CAAACAAATT GTTTATGCTG CTAGATTATC AAAAGAAAAA
GGTATTCTTG AAGTATTGGA TGTTGCAGAA AAATTACCAC AAGACATTCA TCTTTTAATT
TTAGGATCAG GGGTAGAAGA GAATAAAGTA AAAGAATTAT CAGAACTACA AAAAAATATT
CATTTTTTAG GATATCAAAA TAGAGAAAAC ACTCTATCTA TAATTCGTGG TTCTGATTTG
TTAATACAAC CATCTAGAAT GGAAGGTGGA CTAAGTTATA CTTTGTTGGA ATCTATGGCA
TGTGGAACTC CAATTATATG TACTGATGTT GGTGGTGCTA AAGATACTTT ATCTCATATG
AAAAATGCAT TTATTATCAA ACCTGAAAAT TCAACAGAAT TAAAAAATGC TATTAATCAA
TTAATGAACA ACTCAAAACA AAGAGAGGAA CTAAAGAACA ATGCTTTGGA TGAAATCAAA
AATCATGATT GGTCCGTTGT AGGGCCAAAA TATGTAGAAA TTTATCAAAA ATTACTTTCA
TCATAA
|
|---|
| Protein sequence | MKILIISPTQ EGIGGVARHV QGLTKFLKND GHEVDVISSE NTFTIPIRKL KNPSFMLSSF
LKTKFSKKYD VVHAQNVVSA FAMKNVLGKK LLAIHGIHHE QVDHLHGKTA GNVAKDYEDK
ALNWVDAITV SSKEMLDYYS QKGLNTFFLP NALDIQSITK KSNRKFDKQI VYAARLSKEK
GILEVLDVAE KLPQDIHLLI LGSGVEENKV KELSELQKNI HFLGYQNREN TLSIIRGSDL
LIQPSRMEGG LSYTLLESMA CGTPIICTDV GGAKDTLSHM KNAFIIKPEN STELKNAINQ
LMNNSKQREE LKNNALDEIK NHDWSVVGPK YVEIYQKLLS S
|
|---|
| |