Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmar_0002 |
Symbol | |
ID | 5773897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosopumilus maritimus SCM1 |
Kingdom | Archaea |
Replicon accession | NC_010085 |
Strand | - |
Start bp | 1325 |
End bp | 2770 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 641315619 |
Product | DNA polymerase II small subunit |
Protein accession | YP_001581340 |
Protein GI | 161527514 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1311] Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGG AACTGTCCTT TGCATTAAAC TATGCATTAA ACAAAGGATT CCAGATTCAT CCAAATGCTT TTAAAATTTT AGAAAATGTC GATGTGAAAA AACTAGAGAA AATAATAAAG GAAATTGTCA GAGAAAAAAC CAAACAGAAA TTATTTCAAA TCAATCAAGA TGATTTAGAA ACATATCTTG GAATCAAAGA TGATCCATCC TTAGAAAATG AGGTCAAGGT TTTGCTGGAT CCTACAGACA AGATAACCAC GGGAGAAGGA GTAAAGGGAT ACAATGCATT GTTTTCTAGT AGGTTTAACA AACTAAAACG AATAATTTCA GACAGACCAG AGGCTCGAAT GTTAAAATCT CTGACTTTTG TTAAAAATGA AAGATCTGAA GATGACATGT ATGTCTGTGG TTTGGTAACT TCAAGAAATA GTGAGAGAAA TGTAACAAAG TTGGTTTTAG AGGATCCTTC AGGCTCATTT GAGGGGATTA TTTTTGATAC TGAACTTCAA AAGACGGCAG ATACTCTCCT AGTAGACCAA TTTGTTATGG CAAGAGTTAG TGTAGGAAAG AACTCTGGAT TCATCATAAA GGATTTGATT TTTCCGGATA TTCCTGATCA GGCCACAAAC AAGTCAGAAT CTGAAGCCTA TGCCGTATTT TTGTCTGATT TACATATTGG AAGTAAATAT TTCATGGAAG AAGAGTTAAC AGAGTTTTTC TCTTGGATAT CTAGTCCCGA TCCTACAGCA AAAAAAATCC GATTTATTTT GATTGGAGGA GATATGGTTG ATGGGGTTGG AATTTACCCA AATCAGAACA AGGAATTAGT TTGTCAAACC ATAGAGGAAC AGCTTAAAAA AGTTGAAAGT TTGATTGATC AGATTCCAAA AAATATCAAG ATAATCATAA TGCCTGGAAA CCATGATCCG GGTAGAAGGG CACTCCCTCA ACCAGCAATT CCAAAGAAGT ATAATTCTGG ATTATGGGAT AGGGAAAATG TCATAATGGT TGGAAACCCT GCTGTAGTCT CATTAAATGG TGTGAAAGTG ATGATGTTTC ATGGGCAAAG TATTGATGAT ATTGTAAAGA CTACCCCAGG GCTAAGTTAT GACAAGCCAA CAAATGTGAT GAAGCACCTA CTTAGGGCCA GACATCTAAG TCCAATTTAT GGCAGCCAGA CGCCAATTGC TCCTGAGATG CAGGATCTTA TGGTAATTGA AGATATTCCA GATATCTTTC ATGTAGGCCA CGTCCACAAG GCTCAGTTGG ATATGTACAA GGGTATATTG TTGGTTAATT CAGGCTCTTG GCAGAAACAG ACACCATTTC AAGCAAGTGT TGGGATGACT CCAAATCCAG GTATTGCTTT ACTGGTTAAT TTAAAGACCT TTCAGGTTTT CCACCAAAAT TACAATTCTA ATCTAGACAA TATCTTGCAA AGTTAA
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Protein sequence | MKKELSFALN YALNKGFQIH PNAFKILENV DVKKLEKIIK EIVREKTKQK LFQINQDDLE TYLGIKDDPS LENEVKVLLD PTDKITTGEG VKGYNALFSS RFNKLKRIIS DRPEARMLKS LTFVKNERSE DDMYVCGLVT SRNSERNVTK LVLEDPSGSF EGIIFDTELQ KTADTLLVDQ FVMARVSVGK NSGFIIKDLI FPDIPDQATN KSESEAYAVF LSDLHIGSKY FMEEELTEFF SWISSPDPTA KKIRFILIGG DMVDGVGIYP NQNKELVCQT IEEQLKKVES LIDQIPKNIK IIIMPGNHDP GRRALPQPAI PKKYNSGLWD RENVIMVGNP AVVSLNGVKV MMFHGQSIDD IVKTTPGLSY DKPTNVMKHL LRARHLSPIY GSQTPIAPEM QDLMVIEDIP DIFHVGHVHK AQLDMYKGIL LVNSGSWQKQ TPFQASVGMT PNPGIALLVN LKTFQVFHQN YNSNLDNILQ S
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