| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_1180 |
|---|
| Symbol | |
|---|
| ID | 5758308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | - |
|---|
| Start bp | 1264275 |
|---|
| End bp | 1265642 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641302386 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001568221 |
|---|
| Protein GI | 160902640 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA AAGATACAGG AAAAGTTGAT GTTTTAAAAA CATCCATATG GAAAGCTTTA
TTTACCTTAG CCTGGCCAAT TATTTTGACA AATATGATGC AAGCGATATA TAATATAACT
GATGCTTATT TTTTGGGAAA GTTAGGTCCT TTGGAATTAT CTGTTCCTAC TGTAGTTTGG
CCGCTGATCT TTGTTTTTAT ATCTTTTGCC ACAGGATTTT CCTACGCTGG AACCTCTTTG
ATAGCCCAAT ATACAGGATA CGGCGATCAA AGAAGAGCTG AAAAATCGGC AGCTCAAACT
ATTTTGGTAA TGACTTTCGT GGCTTTATCC ATTATGGCAA TAGTTTTGAT CTTTAGCAAG
CAATTATTAT CTCTTTTACA ATTGGATAAA AACATATTCG AACTTAGTAA TACGTATCTA
AAAATAATGG CATTTAGCTT ACCTTTCATT TTTTTAATGC AAACGGTAGC GGGTATATTT
AGGGGATGGG GAAATTCATT TATAGCCCTG AAATACAACG GTATATCAAT CTTGTTGAAT
GTGGCCCTTG ACCCTCTTTT CATTTTCCAA TTCAATTTAG GCGTATTTGG TGCAGCGCTA
GCAACTATGT TATCTCAAGT TATAATATCT GTTGTATTTT TATTTGTATT GTTCAAAGGT
AGAGAGGGTT TTAAATTACA CGCCAAAGAT TTTGTCCCTG ATCCAAAACT TATAAAAAAA
GTGTTATCGG TTGGCTTACC TTCTTCTATT GGCGAATCTT TTACAGCTAT AGGATTTGCT
ATAATTATGG GAGTTATTGC ACAATTTGGG CCTATTGTTA TTAGCGGATA CGGAATCGGA
AATAGAATGA ACAATTTAAT AATTATGTTC GCTATGGGAA TATCTTTGGC AACGGCTACT
ATGACAGGTC AATATGTAGG TGCAAACCAA CCTGAAAGGG CTGAGGAAAC AGTTAGAAAA
GCTTCTTTGG CAACTTTACT GATCGTTGGT AGTGCTTCAA TGGTTATGTT TTTATTTGGT
CACAATATAA CGAAATTTTT CATAAATGAC CCCGAAGTAA TTAAAGTTGG AGAGGAATTT
TTTAGATATG TTTCTTTCTC ACTTCCGTTC TTCTCGTTAG TTTCTGTTTT TCTTGGTACT
TTAAGGGGTA CAGGGCATAC GATTCAGTCA ACCATTATAG ATATGGTAAG ATTGTGGGGA
ATAAGGGTAC CCTTGGTTTT TTTCTTAGCC CAAACTCACG GTTACATAGG TGTTTTCATA
GCAATGATAA TAAGCAATTT TTCTGCGGCT ATATTAGCTT TAGGATTTCT AATTTTTGGG
AACTGGAAAA AACCTGTAAT TGAAGAAGCT TCTCAGAGAA ATGCTTAG
|
|---|
| Protein sequence | MKIKDTGKVD VLKTSIWKAL FTLAWPIILT NMMQAIYNIT DAYFLGKLGP LELSVPTVVW
PLIFVFISFA TGFSYAGTSL IAQYTGYGDQ RRAEKSAAQT ILVMTFVALS IMAIVLIFSK
QLLSLLQLDK NIFELSNTYL KIMAFSLPFI FLMQTVAGIF RGWGNSFIAL KYNGISILLN
VALDPLFIFQ FNLGVFGAAL ATMLSQVIIS VVFLFVLFKG REGFKLHAKD FVPDPKLIKK
VLSVGLPSSI GESFTAIGFA IIMGVIAQFG PIVISGYGIG NRMNNLIIMF AMGISLATAT
MTGQYVGANQ PERAEETVRK ASLATLLIVG SASMVMFLFG HNITKFFIND PEVIKVGEEF
FRYVSFSLPF FSLVSVFLGT LRGTGHTIQS TIIDMVRLWG IRVPLVFFLA QTHGYIGVFI
AMIISNFSAA ILALGFLIFG NWKKPVIEEA SQRNA
|
|---|
| |